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西班牙 Alström 患者中的流行致病变体。

Prevalent Pathogenic Variants in Spanish Alström Patients.

机构信息

CINBIO, Universidad de Vigo, 36310 Vigo, Spain.

Grupo de Investigación en Enfermedades Raras y Medicina Pediátrica, Instituto de Investigación Sanitaria Galicia Sur (IIS Galicia Sur), SERGAS-UVIGO, 36310 Vigo, Spain.

出版信息

Genes (Basel). 2021 Feb 16;12(2):282. doi: 10.3390/genes12020282.

DOI:10.3390/genes12020282
PMID:33669459
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7920446/
Abstract

Alström syndrome (ALMS) is an ultrarare disease with an estimated prevalence lower than 1 in 1,000,000. It is associated with disease-causing mutations in the Alström syndrome 1 () gene, which codifies for a structural protein of the basal body and centrosomes. The symptomatology involves nystagmus, type 2 diabetes mellitus (T2D), obesity, dilated cardiomyopathy (DCM), neurodegenerative disorders and multiorgan fibrosis. We refined the clinical and genetic diagnosis data of 12 patients from 11 families, all of them from Spain. We also studied the allelic frequency of the different variants present in this cohort and performed a haplotype analysis for the most prevalent allele. The genetic analysis revealed 2 novel homozygous variants located in the exon 8, p.(Glu929Ter) and p.(His1808GlufsTer20) in 2 unrelated patients. These 2 novel variants were classified as pathogenic after an experiment (computer analysis). On the other hand, 2 alleles were detected at a high frequency in our cohort: p.(Tyr1714Ter) (25%) and p.(Ser3872TyrfsTer19) (16.7%). The segregation analysis showed that the pathogenic variant p.(Tyr1714Ter) in 3 families is linked to a rare missense polymorphism, p.(Asn1787Asp). In conclusion, 2 novel pathological mutations have been discovered in homozygosis, as well as a probable founder effect in 3 unrelated families.

摘要

Alström 综合征 (ALMS) 是一种极为罕见的疾病,估计患病率低于每 100 万人中有 1 例。它与 Alström 综合征 1 () 基因的致病突变有关,该基因编码基底体和中心体的结构蛋白。其症状包括眼球震颤、2 型糖尿病 (T2D)、肥胖、扩张型心肌病 (DCM)、神经退行性疾病和多器官纤维化。我们对来自 11 个家庭的 12 名患者的临床和遗传诊断数据进行了细化,他们均来自西班牙。我们还研究了该队列中存在的不同变体的等位基因频率,并对最常见的等位基因进行了单倍型分析。基因分析显示,在 2 名无亲缘关系的患者中,exon8 中存在 2 个新的纯合变异,p.(Glu929Ter)和 p.(His1808GlufsTer20)。经过计算机分析,这 2 个新的变异被归类为致病性变异。另一方面,在我们的队列中检测到 2 个高频等位基因:p.(Tyr1714Ter) (25%)和 p.(Ser3872TyrfsTer19) (16.7%)。分离分析表明,在 3 个家族中,致病性变异 p.(Tyr1714Ter)与罕见的错义多态性 p.(Asn1787Asp)相关。总之,在纯合状态下发现了 2 种新的病理性突变,以及在 3 个无亲缘关系的家族中可能存在的创始人效应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcea/7920446/f7f97dd9adbb/genes-12-00282-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcea/7920446/a1e252d7b2ab/genes-12-00282-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcea/7920446/e59c63ae0800/genes-12-00282-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcea/7920446/f7f97dd9adbb/genes-12-00282-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcea/7920446/a1e252d7b2ab/genes-12-00282-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcea/7920446/e59c63ae0800/genes-12-00282-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcea/7920446/f7f97dd9adbb/genes-12-00282-g003.jpg

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Inferring the molecular and phenotypic impact of amino acid variants with MutPred2.使用 MutPred2 推断氨基酸变异的分子和表型影响。
Nat Commun. 2020 Nov 20;11(1):5918. doi: 10.1038/s41467-020-19669-x.
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Characterization of Alstrom Syndrome 1 (ALMS1) Transcript Variants in Hodgkin Lymphoma Cells.霍奇金淋巴瘤细胞中阿尔斯特伦综合征1(ALMS1)转录变体的特征分析
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Nonsyndromic Early-Onset Cone-Rod Dystrophy and Limb-Girdle Muscular Dystrophy in a Consanguineous Israeli Family are Caused by Two Independent yet Linked Mutations in ALMS1 and DYSF.一个近亲通婚的以色列家庭中,非综合征性早发性视锥-视杆营养不良和肢带型肌营养不良由ALMS1和DYSF基因中的两个独立但相关的突变引起。
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