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本文引用的文献

1
Anthranilate phosphoribosyltransferase: Binding determinants for 5'-phospho-alpha-d-ribosyl-1'-pyrophosphate (PRPP) and the implications for inhibitor design.色氨酸磷酸核糖基转移酶:与 5'-磷酸-α-d-核糖基-1'-焦磷酸(PRPP)的结合决定因素及其对抑制剂设计的影响。
Biochim Biophys Acta Proteins Proteom. 2018 Feb;1866(2):264-274. doi: 10.1016/j.bbapap.2017.08.018. Epub 2017 Aug 26.
2
Anthranilate phosphoribosyltransferase from the hyperthermophilic archaeon shows maximum activity with zinc and forms a unique dimeric structure.来自嗜热古菌的邻氨基苯甲酸磷酸核糖基转移酶在有锌的情况下表现出最大活性,并形成独特的二聚体结构。
FEBS Open Bio. 2017 Jul 24;7(8):1217-1230. doi: 10.1002/2211-5463.12264. eCollection 2017 Aug.
3
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
4
Structures of Mycobacterium tuberculosis Anthranilate Phosphoribosyltransferase Variants Reveal the Conformational Changes That Facilitate Delivery of the Substrate to the Active Site.结核分枝杆菌邻氨基苯甲酸磷酸核糖基转移酶变体的结构揭示了促进底物传递至活性位点的构象变化。
Biochemistry. 2015 Oct 6;54(39):6082-92. doi: 10.1021/acs.biochem.5b00612.
5
Deciphering key features in protein structures with the new ENDscript server.利用新的 ENDscript 服务器破译蛋白质结构中的关键特征。
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W320-4. doi: 10.1093/nar/gku316. Epub 2014 Apr 21.
6
Alternative substrates reveal catalytic cycle and key binding events in the reaction catalysed by anthranilate phosphoribosyltransferase from Mycobacterium tuberculosis.结核分枝杆菌中的邻氨基苯甲酸磷酸核糖基转移酶催化反应的替代底物揭示了催化循环和关键结合事件。
Biochem J. 2014 Jul 1;461(1):87-98. doi: 10.1042/BJ20140209.
7
The substrate capture mechanism of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase provides a mode for inhibition.结核分枝杆菌邻氨基苯甲酸磷酸核糖基转移酶的底物捕获机制为抑制作用提供了一种模式。
Biochemistry. 2013 Mar 12;52(10):1776-87. doi: 10.1021/bi301387m. Epub 2013 Feb 28.
8
LigPlot+: multiple ligand-protein interaction diagrams for drug discovery.LigPlot+:用于药物发现的多种配体-蛋白质相互作用图。
J Chem Inf Model. 2011 Oct 24;51(10):2778-86. doi: 10.1021/ci200227u. Epub 2011 Oct 5.
9
REFMAC5 for the refinement of macromolecular crystal structures.用于大分子晶体结构精修的REFMAC5
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10
Overview of the CCP4 suite and current developments.CCP4软件包概述及当前进展
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酿酒酵母色氨酸磷酸核糖基转移酶的晶体结构。

Crystal structures of anthranilate phosphoribosyltransferase from Saccharomyces cerevisiae.

机构信息

School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China.

出版信息

Acta Crystallogr F Struct Biol Commun. 2021 Mar 1;77(Pt 3):61-69. doi: 10.1107/S2053230X21001989. Epub 2021 Mar 3.

DOI:10.1107/S2053230X21001989
PMID:33682790
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7938636/
Abstract

Anthranilate phosphoribosyltransferase (AnPRT) catalyzes the transfer of the phosphoribosyl group of 5'-phosphoribosyl-1'-pyrophosphate (PRPP) to anthranilate to form phosphoribosyl-anthranilate. Crystal structures of AnPRTs from bacteria and archaea have previously been determined; however, the structure of Saccharomyces cerevisiae AnPRT (ScAnPRT) still remains unsolved. Here, crystal structures of ScAnPRT in the apo form as well as in complex with its substrate PRPP and the substrate analogue 4-fluoroanthranilate (4FA) are presented. These structures demonstrate that ScAnPRT exhibits the conserved structural fold of type III phosphoribosyltransferase enzymes and shares the similar mode of substrate binding found across the AnPRT protein family. In addition, crystal structures of ScAnPRT mutants (ScAnPRT and ScAnPRT) were also determined. These structures suggested that the conserved residue Ser121 is critical for binding PRPP, while Gly141 is dispensable for binding 4FA. In summary, these structures improved the preliminary understanding of the substrate-binding mode of ScAnPRT and laid foundations for future research.

摘要

芳香族氨基酸磷酸核糖基转移酶(AnPRT)催化 5'-磷酸核糖基-1'-焦磷酸(PRPP)的磷酸核糖基转移到邻氨基苯甲酸上,形成磷酸核糖基邻氨基苯甲酸。先前已经确定了来自细菌和古菌的 AnPRT 的晶体结构;然而,酿酒酵母 AnPRT(ScAnPRT)的结构仍然未解决。本文呈现了 ScAnPRT 的apo 形式以及与底物 PRPP 和底物类似物 4-氟邻氨基苯甲酸(4FA)复合物的晶体结构。这些结构表明,ScAnPRT 表现出 III 型磷酸核糖基转移酶酶的保守结构折叠,并共享在 AnPRT 蛋白家族中发现的类似的底物结合模式。此外,还确定了 ScAnPRT 突变体(ScAnPRT 和 ScAnPRT)的晶体结构。这些结构表明保守残基 Ser121 对于结合 PRPP 至关重要,而 Gly141 对于结合 4FA 则不是必需的。总之,这些结构提高了对 ScAnPRT 底物结合模式的初步理解,并为未来的研究奠定了基础。