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高效量子化学计算非刚性分子的结构集合和自由能。

Efficient Quantum Chemical Calculation of Structure Ensembles and Free Energies for Nonrigid Molecules.

机构信息

Mulliken Center for Theoretical Chemistry, Institute for Physical and Theoretical Chemistry, University of Bonn, Beringstrasse 4, 53115 Bonn, Germany.

出版信息

J Phys Chem A. 2021 May 20;125(19):4039-4054. doi: 10.1021/acs.jpca.1c00971. Epub 2021 Mar 10.

Abstract

The application of quantum chemical, automatic multilevel modeling workflows for the determination of thermodynamic (e.g., conformation equilibria, partition coefficients, p values) and spectroscopic properties of relatively large, nonrigid molecules in solution is described. Key points are the computation of rather complete structure (conformer) ensembles with extremely fast but still reasonable GFN2-xTB or GFN-FF semiempirical methods in the CREST searching approach and subsequent refinement at a recently developed, accurate rSCAN-3c DFT composite level. Solvation effects are included in all steps by accurate continuum solvation models (ALPB, (D)COSMO-RS). Consistent inclusion of thermostatistical contributions in the framework of the modified rigid-rotor-harmonic-oscillator approximation (mRRHO) based on xTB/FF computed PES is also recommended.

摘要

本文描述了量子化学、自动多级建模工作流程在确定热力学(例如构象平衡、分配系数、p 值)和相对较大的非刚性分子在溶液中的光谱性质中的应用。关键点是使用 CREST 搜索方法以非常快速但仍然合理的 GFN2-xTB 或 GFN-FF 半经验方法计算相当完整的结构(构象)集合,并在最近开发的准确 rSCAN-3c DFT 复合水平上进行后续细化。通过精确的连续体溶剂化模型(ALPB、(D)COSMO-RS)在所有步骤中都包含溶剂化效应。还建议在基于 xTB/FF 计算的 PES 的修正刚性转子-简谐振荡器近似(mRRHO)框架内一致包含统计贡献。

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