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基于遗传学方法鉴定小鼠肝脏中由芳烃受体调控的新基因

Genetics-Based Approach to Identify Novel Genes Regulated by the Aryl Hydrocarbon Receptor in Mouse Liver.

作者信息

Jurgelewicz Amanda, Dornbos Peter, Warren Melanie, Nault Rance, Arkatkar Anooj, Lin Hui, Threadgill David W, Zacharewski Tim, LaPres John J

机构信息

Department of Pharmacology and Toxicology, Michigan State University, East Lansing, Michigan 48824, USA.

Institute for Integrative Toxicology, Michigan State University, East Lansing, Michigan 48824, USA.

出版信息

Toxicol Sci. 2021 May 27;181(2):285-294. doi: 10.1093/toxsci/kfab032.

DOI:10.1093/toxsci/kfab032
PMID:33720361
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8599770/
Abstract

The aryl hydrocarbon receptor (AHR) is a ligand-activated transcription factor in the Per-Arnt-Sim superfamily of environmental sensors that is linked to several metabolic diseases, including nonalcoholic fatty liver disease. Much remains unknown regarding the impact of genetic variation in AHR-driven disease, as past studies have focused on a small number of inbred strains. Recently, the presence of a wide range of interindividual variability amongst humans was reported in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), the prototypical ligand of the AHR. In this study, a panel of 14 diverse mouse strains was exposed to TCDD for 10 days to characterize the AHR-mediated response across genetic backgrounds. Responses to TCDD are heavily dependent on genetic background. Although mice carry 1 of 4 Ahr alleles known to impact the affinity to AHR-ligands, we observed significant intra-allelic variability suggesting the presence of novel genetic modifiers of AHR signaling. A regression-based approach was used to scan for genes regulated by the AHR and/or associated with TCDD-induced phenotypes. The approach identified 7 genes, 2 of which are novel, that are likely regulated by the AHR based on association with hepatic TCDD burden (p ≤ .05). Finally, we identified 1 gene, Dio1, which was associated with change in percent body fat across the diverse set of strains (p ≤ .05). Overall, the results in this study exemplify the power of genetics-based approaches in identifying novel genes that are putatively regulated by the AHR.

摘要

芳烃受体(AHR)是环境传感器Per-Arnt-Sim超家族中的一种配体激活转录因子,与多种代谢疾病相关,包括非酒精性脂肪性肝病。关于AHR驱动疾病中基因变异的影响,仍有许多未知之处,因为过去的研究集中在少数近交系上。最近,有报道称人类对AHR的典型配体2,3,7,8-四氯二苯并对二恶英(TCDD)存在广泛的个体间差异。在本研究中,一组14种不同的小鼠品系暴露于TCDD 10天,以表征不同遗传背景下AHR介导的反应。对TCDD的反应在很大程度上依赖于遗传背景。尽管小鼠携带已知影响与AHR配体亲和力的4种Ahr等位基因中的1种,但我们观察到显著的等位基因内变异,表明存在AHR信号传导的新型遗传修饰因子。使用基于回归的方法扫描由AHR调控和/或与TCDD诱导表型相关的基因。该方法鉴定出7个基因,其中2个是新基因,基于与肝脏TCDD负荷的关联,它们可能受AHR调控(p≤0.05)。最后,我们鉴定出1个基因Dio1,它与不同品系组中体脂百分比的变化相关(p≤0.05)。总体而言,本研究结果例证了基于遗传学方法在鉴定可能受AHR调控的新基因方面的作用。

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