The Wistar Institute, Philadelphia, Pennsylvania.
Department of Biochemistry and Molecular Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania.
Mol Cancer Res. 2021 Jul;19(7):1099-1112. doi: 10.1158/1541-7786.MCR-20-0080. Epub 2021 Mar 17.
BAP1 is an ubiquitin hydrolase whose deubiquitinase activity is mediated by polycomb group-like protein ASXL2. Cancer-related mutations/deletions lead to loss-of-function by targeting the catalytic ubiquitin C-terminal hydrolase (UCH) or UCH37-like domain (ULD) domains of BAP1, and the latter disrupts binding to ASXL2, an obligate partner for BAP1 enzymatic activity. However, the biochemical and biophysical properties of domains involved in forming the enzymatically active complex are unknown. Here, we report the molecular dynamics, kinetics, and stoichiometry of these interactions. We demonstrate that interactions between BAP1 and ASXL2 are direct, specific, and stable to biochemical and biophysical manipulations as detected by isothermal titration calorimetry (ITC), GST association, and optical biosensor assays. Association of the ASXL2-AB box greatly stimulates BAP1 activity. A stable ternary complex is formed, comprised of the BAP1-UCH, BAP1-ULD, and ASXL2-AB domains. Stoichiometric analysis revealed that one molecule of the ULD domain directly interacts with one molecule of the AB box. Real-time kinetic analysis of the ULD/AB protein complex to the BAP1-UCH domain, based on surface plasmon resonance, indicated that formation of the ULD/AB complex with the UCH domain is a single-step event with fast association and slow dissociation rates. experiments validated in cells that the ASXL-AB box directly regulates BAP1 activity. IMPLICATIONS: Collectively, these data elucidate molecular interactions between specific protein domains regulating BAP1 deubiquitinase activity, thus establishing a foundation for small-molecule approaches to reactivate latent wild-type BAP1 catalytic activity in -mutant cancers.
BAP1 是一种泛素水解酶,其去泛素酶活性由多梳组样蛋白 ASXL2 介导。癌症相关的突变/缺失通过靶向 BAP1 的催化泛素 C 端水解酶 (UCH) 或 UCH37 样结构域 (ULD) 结构域导致功能丧失,后者破坏了与 ASXL2 的结合,ASXL2 是 BAP1 酶活性的必需伴侣。然而,参与形成具有酶活性的复合物的结构域的生化和生物物理特性尚不清楚。在这里,我们报告了这些相互作用的分子动力学、动力学和化学计量学。我们证明了 BAP1 和 ASXL2 之间的相互作用是直接的、特异性的,并且通过等温滴定量热法 (ITC)、GST 关联和光学生物传感器测定来检测到的生化和生物物理操作是稳定的。ASXL2-AB 盒的结合极大地刺激了 BAP1 的活性。形成了一个稳定的三元复合物,由 BAP1-UCH、BAP1-ULD 和 ASXL2-AB 结构域组成。化学计量分析表明,一个 ULD 结构域分子直接与一个 AB 盒分子相互作用。基于表面等离子体共振的实时动力学分析表明,ULD/AB 蛋白复合物与 BAP1-UCH 结构域的形成是一个单步事件,具有快速的缔合和缓慢的解离速率。细胞实验验证了 ASXL-AB 盒直接调节 BAP1 活性。意义:总的来说,这些数据阐明了调节 BAP1 去泛素酶活性的特定蛋白质结构域之间的分子相互作用,从而为重新激活 - 突变癌症中潜在的野生型 BAP1 催化活性的小分子方法奠定了基础。