Microbial Processes and Technology Division, CSIR- National Institute for Interdisciplinary Science and Technology, Thiruvananthapuram, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.
Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore- 560012, India.
Fungal Genet Biol. 2021 Jun;151:103551. doi: 10.1016/j.fgb.2021.103551. Epub 2021 Mar 16.
Draft genome sequence of the glucose tolerant beta glucosidase (GT-BGL) producing rare fungus Aspergillus unguis NII 08,123 was generated through Next Generation Sequencing (NGS). The genome size of the fungus was estimated to be 37.1 Mb. A total of 3116 contigs were assembled using SPades, and 15,161 proteins were predicted using AUGUSTUS 3.1. Among them, 13,850 proteins were annotated using UniProt. Distribution of CAZyme genes specifically those encoding lignocellulose degrading enzymes were analyzed and compared with those from the industrial cellulase producer Trichoderma reesei in view of the huge differences in detectable enzyme activities between the fungi, despite the ability of A. unguis to grow on lignocellulose as sole carbon source. Full length gene sequence of the inducible GT-BGL could be identified through tracing back from peptide mass fingerprint. A total of 403 CAZymes were predicted from the genome, which includes 232 glycoside hydrolases (GHs), 12 carbohydrate esterases (CEs), 109 glycosyl transferases (GTs), 15 polysaccharide lyases (PLs), and 35 genes with auxiliary activities (AAs). The high level of zinc finger motif containing transcription factors could possibly hint a tight regulation of the cellulolytic machinery, which may also explain the low cellulase activities even when a complete repertoire of cellulase degrading enzyme genes are present in the fungus.
通过下一代测序(NGS),我们生成了耐葡萄糖的β-葡萄糖苷酶(GT-BGL)产生稀有真菌棘孢曲霉 NII 08,123 的基因组草图序列。该真菌的基因组大小估计为 37.1 Mb。使用 SPAdes 组装了总共 3116 个 contigs,并使用 AUGUSTUS 3.1 预测了 15,161 个蛋白质。其中,使用 UniProt 对 13,850 个蛋白质进行了注释。分析了 CAZyme 基因的分布,特别是那些编码木质纤维素降解酶的基因,并与工业纤维素酶生产菌里氏木霉进行了比较,因为尽管棘孢曲霉能够以木质纤维素作为唯一碳源生长,但真菌之间可检测酶活性的差异巨大。通过追溯肽质量指纹图谱,可以鉴定出可诱导的 GT-BGL 的全长基因序列。从基因组中预测到总共 403 个 CAZymes,其中包括 232 个糖苷水解酶(GHs)、12 个碳水化合物酯酶(CEs)、109 个糖基转移酶(GTs)、15 个多糖裂解酶(PLs)和 35 个具有辅助活性(AA)的基因。含有锌指模体的转录因子的高含量可能暗示着纤维素分解酶机制的紧密调控,这也可能解释了即使真菌中存在完整的纤维素降解酶基因,纤维素酶活性仍然很低的原因。