Laboratory of Applied and Functional Genomics, Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan.
J Biomol Struct Dyn. 2022 Oct;40(17):7829-7851. doi: 10.1080/07391102.2021.1902395. Epub 2021 Mar 25.
and are two Pakistani indigenous herbal medicines used to treat liver infections, including hepatitis C virus (HCV). This study aimed to evaluate the cytotoxicity, and antioxidant activity of these plant extracts and computationally screen their selected phytoconstituents as HCV NS5A inhibitors. The viability of HepG2 cells was assessed 24 h and 48 h post-treatment using colorimetric and dye exclusion methods. Antioxidant properties were examined by the 2,2-diphenyl-1-picrylhydrazyl (DPPH), reducing power, and total antioxidant capacity assays. Seventeen known phytochemicals identified from each plant were docked into the active binding site of HCV NS5A protein. The top hit ligands were analyzed for their druglikeness properties and the indices of absorption, distribution, metabolism, elimination, and toxicity (ADMET). The results showed that both plant extracts were non-toxic (CC > 200 µg/ml). The IC values of DPPH-radical scavenging activity were 51.02 ± 0.94 and 62.91 ± 1.85 µg/ml for and , respectively. They also exhibited reducing power and total antioxidant capacity.The phytochemicals were identified as potent HCV NS5A inhibitors with good druglikeness and ADMET properties. Six of the docked phytochemicals exhibited higher binding scores (-17.9 to -19.2 kcal/mol) with HCV NS5A protein than the standard drug, daclatasvir (-17.2 kcal/mol). Molecular dynamics (MD) simulation confirmed the stability of two compounds, berbamine and paprafumine at 100 ns with active site of HCV NS5A protein. The identified compounds through molecular docking and MD simulation could have potential as HCV NS5A inhibitor after further validation.
和 是两种用于治疗肝脏感染的巴基斯坦本土草药,包括丙型肝炎病毒 (HCV)。本研究旨在评估这些植物提取物的细胞毒性和抗氧化活性,并通过计算筛选其选定的植物成分作为 HCV NS5A 抑制剂。使用比色法和染料排除法在处理后 24 和 48 小时评估 HepG2 细胞的活力。通过 2,2-二苯基-1-苦基肼基 (DPPH)、还原力和总抗氧化能力测定来检查抗氧化特性。从每种植物中鉴定出 17 种已知的植物化学物质,并对接入 HCV NS5A 蛋白的活性结合位点。对接的顶级配体进行药物相似性特性以及吸收、分布、代谢、消除和毒性 (ADMET) 指数分析。结果表明,两种植物提取物均无毒性 (CC > 200 μg/ml)。DPPH 自由基清除活性的 IC 值分别为 和 的 51.02 ± 0.94 和 62.91 ± 1.85 μg/ml。它们还表现出还原能力和总抗氧化能力。这些植物化学物质被鉴定为具有良好药物相似性和 ADMET 特性的潜在 HCV NS5A 抑制剂。对接的 6 种植物化学物质与 HCV NS5A 蛋白的结合评分 (-17.9 至-19.2 kcal/mol) 均高于标准药物达拉他韦 (-17.2 kcal/mol)。分子动力学 (MD) 模拟证实了两种化合物,小檗胺和巴福明在 HCV NS5A 蛋白活性位点 100 ns 时的稳定性。通过分子对接和 MD 模拟鉴定的化合物在进一步验证后可能具有作为 HCV NS5A 抑制剂的潜力。