Shi Luye, Liu Likuan, Li Xiujuan, Wu Yue, Tian Xiangyu, Shi Yuhua, Wang Zhenlong
School of Life Sciences, Zhengzhou University, Zhengzhou, Henan, China.
School of Life Sciences, Qinghai Normal University, Xining, Qinghai, China.
PeerJ. 2021 Mar 16;9:e10850. doi: 10.7717/peerj.10850. eCollection 2021.
The species of Lataste 1887 with their related genera remains undetermined owing to inconsistent morphological characteristics and molecular phylogeny. To investigate the phylogenetic relationship and speciation among species of the genus , we sequenced and annotated the whole mitochondrial genomes of three individual species, namely Radde 1861, Milne-Edwards 1871, and () Büchner 1889. The nucleotide sequences of the circular mitogenomes were identical for each individual species of , , and . Each species contained 13 protein-coding genes (PCGs), 22 transfer RNAs, and 2 ribosomal RNAs, with mitochondrial genome lengths of 16,557 bp, 16,562 bp, and 16,324 bp, respectively. The mitogenomes and PCGs showed positive AT skew and negative GC skew. Mitogenomic phylogenetic analyses suggested that , , and Pallas 1779 belong to the genus , whereas belongs to the genus grouped with . showed the closest relationship with Büchner 1889 and Kuroda 1920, which are considered as the paraphyletic species of genera Microtus. and niche model analysis revealed that may have first appeared during the early Pleistocene epoch. Further, separated from others over 1.53 million years ago (Ma) and then diverged into and 0.76 Ma. The relative contribution of climatic fluctuations to speciation and selection in this group requires further research.
由于形态特征和分子系统发育不一致,1887年拉塔斯特所描述的物种及其相关属仍未确定。为了研究该属物种之间的系统发育关系和物种形成,我们对三个个体物种的线粒体全基因组进行了测序和注释,这三个物种分别是1861年的拉德鼠、1871年的米尔恩 - 爱德华兹鼠和1889年布赫纳所描述的(某物种)。圆线粒体基因组的核苷酸序列在拉德鼠、米尔恩 - 爱德华兹鼠和(该物种)的每个个体物种中都是相同的。每个物种都包含13个蛋白质编码基因(PCGs)、22个转运RNA和2个核糖体RNA,线粒体基因组长度分别为16,557 bp、16,562 bp和16,324 bp。线粒体基因组和蛋白质编码基因显示出正的AT偏斜和负的GC偏斜。线粒体基因组系统发育分析表明,拉德鼠、米尔恩 - 爱德华兹鼠和1779年的帕拉斯鼠属于该属,而(某物种)属于与(另一属)聚在一起的(另一属)。(某物种)与1889年的布赫纳鼠和1920年的黑田鼠显示出最密切的关系,它们被认为是田鼠属的并系物种。(某物种)和生态位模型分析表明,(某物种)可能最早出现在更新世早期。此外,(某物种)在153万年前(Ma)与其他物种分离,然后在0.76 Ma时分化为(其他两个物种)。气候波动对该类群物种形成和选择的相对贡献需要进一步研究。