Allen Institute for Brain Science, Seattle, WA, USA.
Allen Institute for Brain Science, Seattle, WA, USA.
Cell Rep. 2021 Mar 30;34(13):108754. doi: 10.1016/j.celrep.2021.108754.
Viral genetic tools that target specific brain cell types could transform basic neuroscience and targeted gene therapy. Here, we use comparative open chromatin analysis to identify thousands of human-neocortical-subclass-specific putative enhancers from across the genome to control gene expression in adeno-associated virus (AAV) vectors. The cellular specificity of reporter expression from enhancer-AAVs is established by molecular profiling after systemic AAV delivery in mouse. Over 30% of enhancer-AAVs produce specific expression in the targeted subclass, including both excitatory and inhibitory subclasses. We present a collection of Parvalbumin (PVALB) enhancer-AAVs that show highly enriched expression not only in cortical PVALB cells but also in some subcortical PVALB populations. Five vectors maintain PVALB-enriched expression in primate neocortex. These results demonstrate how genome-wide open chromatin data mining and cross-species AAV validation can be used to create the next generation of non-species-restricted viral genetic tools.
靶向特定脑细胞类型的病毒遗传工具可以改变基础神经科学和靶向基因治疗。在这里,我们使用比较开放染色质分析从整个基因组中鉴定出数千个人类新皮层亚型特异性推定增强子,以控制腺相关病毒 (AAV) 载体中的基因表达。通过在小鼠中进行系统 AAV 递送后的分子分析,确定了增强子-AAV 中报告基因表达的细胞特异性。超过 30%的增强子-AAV 在目标亚型中产生特异性表达,包括兴奋性和抑制性亚型。我们提出了一系列 Parvalbumin (PVALB) 增强子-AAV,它们不仅在皮质 PVALB 细胞中表现出高度富集的表达,而且在一些皮质下 PVALB 群体中也表现出高度富集的表达。五种载体在灵长类新皮层中保持 PVALB 富集表达。这些结果表明如何使用全基因组开放染色质数据挖掘和跨物种 AAV 验证来创建下一代非物种限制的病毒遗传工具。