Rocasolano Institute for Physical Chemistry, Spanish National Research Council (IQFR/CSIC), Serrano 119, E28006, Madrid, Spain.
School of Chemistry, Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.
Arch Biochem Biophys. 2021 Jun 15;704:108867. doi: 10.1016/j.abb.2021.108867. Epub 2021 Mar 29.
Many intrinsically disordered proteins contain Gly-rich regions which are generally assumed to be disordered. Such regions often form biomolecular condensates which play essential roles in organizing cellular processes. However, the bases of their formation and stability are still not completely understood. Based on NMR studies of the Gly-rich H. harveyi "snow flea" antifreeze protein, we recently proposed that Gly-rich sequences, such as the third "RGG" region of Fused in Sarcoma (FUS) protein, may adopt polyproline II helices whose association might stabilize condensates. Here, this hypothesis is tested with a polypeptide corresponding to the third RGG region of FUS. NMR spectroscopy and molecular dynamics simulations suggest that significant populations of polyproline II helix are present. These findings are corroborated in a model peptide Ac-RGGYGGRGGWGGRGGY-NH, where a peak characteristic of polyproline II helix is observed using CD spectroscopy. Its intensity suggests a polyproline II population of 40%. This result is supported by data from FTIR and NMR spectroscopies. In the latter, NOE correlations are observed between the Tyr and Arg, and Arg and Trp side chain hydrogens, confirming that side chains spaced three residues apart are close in space. Taken together, the data are consistent with a polyproline II helix, which is bent to optimize interactions between guanidinium and aromatic moieties, in equilibrium with a statistical coil ensemble. These results lend credence to the hypothesis that Gly-rich segments of disordered proteins may form polyproline II helices which help stabilize biomolecular condensates.
许多天然无序蛋白质含有富含甘氨酸的区域,这些区域通常被认为是无序的。这些区域经常形成生物分子凝聚物,在组织细胞过程中发挥着重要作用。然而,它们形成和稳定的基础仍不完全清楚。基于对富含甘氨酸的 Harveyi“雪蚤”抗冻蛋白的 NMR 研究,我们最近提出,富含甘氨酸的序列,如融合肉瘤(FUS)蛋白的第三个“RGG”区域,可能采用多聚脯氨酸 II 螺旋,其缔合可能稳定凝聚物。在这里,用对应 FUS 蛋白第三个 RGG 区域的多肽来检验这一假说。NMR 光谱和分子动力学模拟表明,存在大量的多聚脯氨酸 II 螺旋。在模型肽 Ac-RGGYGGRGGWGGRGGY-NH 中得到了证实,该模型肽中观察到了 CD 光谱中多聚脯氨酸 II 螺旋的特征峰。其强度表明多聚脯氨酸 II 的含量为 40%。这一结果得到了傅里叶变换红外和 NMR 光谱数据的支持。在后一种情况下,观察到 Tyr 和 Arg 以及 Arg 和 Trp 侧链氢之间的 NOE 相关,证实了相隔三个残基的侧链在空间上是接近的。总的来说,这些数据与一个多聚脯氨酸 II 螺旋一致,该螺旋弯曲以优化胍基和芳香部分之间的相互作用,与统计线圈集合处于平衡状态。这些结果支持了这样一种假说,即无序蛋白质的富含甘氨酸的片段可能形成多聚脯氨酸 II 螺旋,这有助于稳定生物分子凝聚物。