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多聚脯氨酸 II 螺旋缔合是否调节生物分子凝聚物?

Do polyproline II helix associations modulate biomolecular condensates?

机构信息

Departamento de Química Física Biológica, Instituto de Química Física Rocasolano, CSIC, Madrid, España.

出版信息

FEBS Open Bio. 2021 Sep;11(9):2390-2399. doi: 10.1002/2211-5463.13163. Epub 2021 May 2.

Abstract

Biomolecular condensates are microdroplets that form inside cells and serve to selectively concentrate proteins, RNAs and other molecules for a variety of physiological functions, but can contribute to cancer, neurodegenerative diseases and viral infections. The formation of these condensates is driven by weak, transient interactions between molecules. These weak associations can operate at the level of whole protein domains, elements of secondary structure or even moieties composed of just a few atoms. Different types of condensates do not generally combine to form larger microdroplets, suggesting that each uses a distinct class of attractive interactions. Here, we address whether polyproline II (PPII) helices mediate condensate formation. By combining with PPII-binding elements such as GYF, WW, profilin, SH3 or OCRE domains, PPII helices help form lipid rafts, nuclear speckles, P-body-like neuronal granules, enhancer complexes and other condensates. The number of PPII helical tracts or tandem PPII-binding domains can strongly influence condensate stability. Many PPII helices have a low content of proline residues, which hinders their identification. Recently, we characterized the NMR spectral properties of a Gly-rich, Pro-poor protein composed of six PPII helices. Based on those results, we predicted that many Gly-rich segments may form PPII helices and interact with PPII-binding domains. This prediction is being tested and could join the palette of verified interactions contributing to biomolecular condensate formation.

摘要

生物分子凝聚物是在细胞内形成的微滴,用于选择性地浓缩蛋白质、RNA 和其他分子,以实现多种生理功能,但也可能导致癌症、神经退行性疾病和病毒感染。这些凝聚物的形成是由分子之间的弱、瞬时相互作用驱动的。这些弱相互作用可以在整个蛋白质结构域、二级结构元件甚至只有几个原子组成的部分的水平上发挥作用。不同类型的凝聚物通常不会结合形成更大的微滴,这表明每种凝聚物都使用独特的吸引相互作用类型。在这里,我们探讨了聚脯氨酸 II (PPII) 螺旋是否介导凝聚物的形成。通过与 PPII 结合元件(如 GYF、WW、原肌球蛋白、SH3 或 OCRE 结构域)结合,PPII 螺旋有助于形成脂筏、核斑点、P 体样神经元颗粒、增强子复合物和其他凝聚物。PPII 螺旋束或串联的 PPII 结合结构域的数量可以强烈影响凝聚物的稳定性。许多 PPII 螺旋的脯氨酸残基含量较低,这阻碍了它们的识别。最近,我们对由六个 PPII 螺旋组成的富含甘氨酸、脯氨酸含量低的蛋白质的 NMR 光谱特性进行了表征。基于这些结果,我们预测许多富含甘氨酸的片段可能形成 PPII 螺旋并与 PPII 结合结构域相互作用。这一预测正在被验证,它可能成为参与生物分子凝聚物形成的已验证相互作用的调色板之一。

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