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能够还原亚硒酸盐的宋内志贺氏菌菌株SE6-1的全基因组序列

Complete Genome Sequence of Shigella sonnei Strain SE6-1, Capable of Selenate Reduction.

作者信息

Nogrado Kathyleen, Cho Ahyeon, Han Dukki, Ho Cuong Tu, Fredrickson James K, Lee Ji-Hoon

机构信息

Department of Bioenvironmental Chemistry, Jeonbuk National University, Jeonju, Jeollabuk-do, Republic of Korea.

Department of Marine Molecular Bioscience, Gangneung-Wonju National University, Gangneung, Ganwon-do, Republic of Korea.

出版信息

Microbiol Resour Announc. 2021 Apr 1;10(13):e00135-21. doi: 10.1128/MRA.00135-21.

DOI:10.1128/MRA.00135-21
PMID:33795341
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8104049/
Abstract

We report the complete genome sequence of selenate [Se(VI)]-reducing SE6-1, which was isolated from stream sediment from an industrial complex in Jeonju, South Korea. The genome sequence is 4,762,774 bp long, with a G+C content of 50.7% and 4,548 genes, including 4,440 coding sequences, 22 rRNA genes, and 86 tRNA genes.

摘要

我们报告了从韩国全州一个工业园区的溪流沉积物中分离出的还原硒酸盐[Se(VI)]的SE6-1的全基因组序列。该基因组序列长4,762,774 bp,G+C含量为50.7%,有4,548个基因,包括4,440个编码序列、22个rRNA基因和86个tRNA基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/103c/8104049/1420ead3a6ed/MRA.00135-21-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/103c/8104049/1420ead3a6ed/MRA.00135-21-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/103c/8104049/1420ead3a6ed/MRA.00135-21-f0001.jpg

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本文引用的文献

1
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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OrthoANI: An improved algorithm and software for calculating average nucleotide identity.OrthoANI:一种用于计算平均核苷酸一致性的改进算法及软件。
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.
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Molecular cloning and characterization of the srdBCA operon, encoding the respiratory selenate reductase complex, from the selenate-reducing bacterium Bacillus selenatarsenatis SF-1.
从亚硒酸盐还原菌 Bacillus selenatarsenatis SF-1 中克隆和表征编码呼吸亚硒酸盐还原酶复合物的 srdBCA 操纵子。
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