Hernández-Oaxaca Diana, López-Sánchez Rafael, Lozano Luis, Wacher-Rodarte Carmen, Segovia Lorenzo, López Munguía Agustín
Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Cuernavaca, Mexico.
Programa de Genómica Evolutiva, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México (UNAM), Cuernavaca, Mexico.
Front Microbiol. 2021 Mar 18;12:629449. doi: 10.3389/fmicb.2021.629449. eCollection 2021.
The genus is composed of a group of Gram-positive facultative anaerobe bacteria with fermentative metabolism. Strains of this genus have been isolated from various ecological niches, including a wide variety of fermented cereal foods. The present study aimed to determine the relative abundance and fermentation capabilities of species isolated from , a traditional product made of lime-cooked (nixtamalized) fermented maize. We sequenced the V3-V4 regions of 16S rDNA; was detected early in the fermentation process and reached its highest relative abundance (3.89%) after 3 h of culture. In addition, we evaluated five strains previously isolated from but reported as non-amylolytic, to define alternative carbon sources such as xylan, xylooligosaccharides, and sucrose. While no growth was observed on birch xylan, growth did occur on xylooligosaccharides and sucrose. Strains WcL17 and WCP-3A were selected for genomic sequencing, as the former shows efficient growth on xylooligosaccharides and the latter displays high glycosyltransferase (GTF) activity. Genomes of both strains were assembled and recorded, with a total of 2.3 Mb in 30 contigs for WcL17 and 2.2 Mb in 45 contigs for WCP-3a. Both strains were taxonomically assigned to and genomic analyses were performed to evaluate the gene products encoding active carbohydrate enzymes (CAZy). Both strains have the gene content needed to metabolize sucrose, hemicellulose, cellulose, and starch residues, all available in . Our results suggest that the range of secondary enzymatic activity in strains confer them with wide capabilities to participate in fermentative processes of natural products with heterogeneous carbon sources.
该属由一组具有发酵代谢的革兰氏阳性兼性厌氧菌组成。该属的菌株已从各种生态位中分离出来,包括多种发酵谷物食品。本研究旨在确定从一种由石灰煮熟(经碱处理)的发酵玉米制成的传统产品中分离出的该属物种的相对丰度和发酵能力。我们对16S rDNA的V3 - V4区域进行了测序;在发酵过程早期检测到该菌,培养3小时后其相对丰度达到最高(3.89%)。此外,我们评估了先前从该产品中分离出但报告为非淀粉酶解的5株该属菌株,以确定替代碳源,如木聚糖、低聚木糖和蔗糖。虽然在桦木木聚糖上未观察到生长,但在低聚木糖和蔗糖上有生长。选择菌株WcL17和WCP - 3A进行基因组测序,因为前者在低聚木糖上显示出高效生长,后者表现出高糖基转移酶(GTF)活性。对这两个菌株的基因组进行了组装和记录,WcL17共有2.3 Mb,分布在30个重叠群中,WCP - 3a共有2.2 Mb,分布在45个重叠群中。这两个菌株在分类学上都归为该属,并进行了基因组分析以评估编码活性碳水化合物酶(CAZy)的基因产物。这两个菌株都具有代谢蔗糖、半纤维素、纤维素和淀粉残渣所需的基因内容,这些在该产品中均有。我们的结果表明,该属菌株的二级酶活性范围使其具有广泛的能力参与具有异质碳源的天然产物的发酵过程。