Feng Xiao, Xue-Mei Yang, Yang Zhao, Fu-Hua Fan
Foresty college of Guizhou University, Institute for Forest Resources & Environment of Guizhou, Guiyang, 550225, China.
Open Life Sci. 2018 Apr 23;13:97-106. doi: 10.1515/biol-2018-0014. eCollection 2018 Jan.
The normal megastrobilli and microstrobilli before and after the sexual reversal in Lamb. were studied and classified using a transcriptomic approach. In the analysis, a total of 190,023 unigenes were obtained with an average length of 595 bp. The annotated unigenes were divided into 56 functional groups and 130 metabolic pathways involved in the physiological and biochemical processes related to ribosome biogenesis, carbon metabolism, and amino acid biosynthesis. Analysis revealed 4,758 differentially expressed genes (DEGs) between the mega- and microstrobili from the polycone twig. The DEGs between the mega- and microstrobili from the normal twig were 5,550. In the polycone twig, 1,188 DEGs were identified between the microstrobili and the sexually reversed megastrobili. Concerning plant hormone signal transduction pathways, the DEGs from both the normal and polycone twigs displayed distinct male or female associated expression patterns. There were 36 common hormone-related DEGs from the two types of twigs of . . Interestingly, expression of these DEGs was up-regulated in the bisexual strobili, which underwent the sexual reversal. A portion of MADS-box genes in the bisexual strobili were up-regulated relative to expression in microstrobili.
利用转录组学方法对羊齿植物性逆转前后的正常大孢子叶球和小孢子叶球进行了研究和分类。在分析中,共获得190,023个单基因,平均长度为595 bp。注释后的单基因被分为56个功能组和130条代谢途径,这些途径参与了与核糖体生物发生、碳代谢和氨基酸生物合成相关的生理生化过程。分析显示,来自多聚球小枝的大孢子叶球和小孢子叶球之间有4758个差异表达基因(DEG)。来自正常小枝的大孢子叶球和小孢子叶球之间的DEG有5550个。在多聚球小枝中,在小孢子叶球和性逆转后的大孢子叶球之间鉴定出1188个DEG。关于植物激素信号转导途径,来自正常小枝和多聚球小枝的DEG均表现出明显的与雄性或雌性相关的表达模式。来自两种小枝的共有36个与激素相关的DEG……有趣的是,这些DEG在经历性逆转的双性孢子叶球中表达上调。双性孢子叶球中的一部分MADS-box基因相对于小孢子叶球中的表达上调。