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采用分子模拟方法从新木脂素类化合物中鉴定嘌呤核苷磷酸化酶的潜在抑制剂。

Identification of potential inhibitors of purine nucleoside phosphorylase from neolignan compounds using molecular modelling approaches.

机构信息

Laboratório de Modelagem Molecular, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, Brazil.

Laboratório de Biotecnologia de Enzimas e Biotransformação, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém-PA, Brazil.

出版信息

J Biomol Struct Dyn. 2022 Nov;40(18):8248-8260. doi: 10.1080/07391102.2021.1910073. Epub 2021 Apr 8.

Abstract

Schistosomiasis is a parasitic disease that is part of the neglected tropical diseases (NTDs), which cause significant levels of morbidity and mortality in millions of people throughout the world. The enzyme purine nucleoside phosphorylase from (PNP) represents a potential target for discovering new agents, and neolignans stand out as an important class of compounds. In this work, molecular modeling studies and biological assays of a set of neolignans were conducted against the PNP enzymes of the parasite and the human homologue (PNP). The results of the molecular docking described that the neolignans showed good complementarity by the active site of PNP. Molecular dynamics (MD) studies revealed that both complexes (/PNP - neolignan compounds) were stable by analyzing the root mean square deviation (RMSD) values, and the binding free energy values suggest that the selected structures can interact and inhibit the catalytic activity of the PNP. Finally, the biological assay indicated that the selected neolignans presented a better molecular profile of inhibition compared to the human enzyme, as these ligands did not have the capacity to inhibit enzymatic activity, indicating that these compounds are promising candidates and that they can be used in future research in chemotherapy for schistosomiasis.Communicated by Ramaswamy H. Sarma.

摘要

血吸虫病是一种寄生虫病,属于被忽视的热带病(NTDs),在全球范围内导致数百万人患病和死亡。来自(PNP)的嘌呤核苷磷酸化酶代表了发现新药物的潜在靶点,而新木脂素则是一类重要的化合物。在这项工作中,对一组新木脂素进行了针对寄生虫和人类同源物(PNP)的 PNP 酶的分子建模研究和生物测定。分子对接的结果表明,新木脂素通过与 PNP 的活性位点表现出良好的互补性。分子动力学(MD)研究表明,通过分析均方根偏差(RMSD)值,两个复合物(/ PNP - 新木脂素化合物)都很稳定,结合自由能值表明所选结构可以相互作用并抑制 PNP 的催化活性。最后,生物测定表明,与人类酶相比,所选新木脂素具有更好的抑制分子特征,因为这些配体没有抑制酶活性的能力,这表明这些化合物是有前途的候选药物,可以在未来的血吸虫病化疗研究中使用。由 Ramaswamy H. Sarma 传达。

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