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数字图像处理检测石珊瑚的细微运动。

Digital image processing to detect subtle motion in stony coral.

机构信息

Department of Aeronautics and Astronautics, University of Washington, Seattle, WA, 98195-2400, USA.

Department of Chemical and Life Science and Engineering, Virginia Commonwealth University, Richmond, VA, USA.

出版信息

Sci Rep. 2021 Apr 8;11(1):7722. doi: 10.1038/s41598-021-85800-7.

Abstract

Coral reef ecosystems support significant biological activities and harbor huge diversity, but they are facing a severe crisis driven by anthropogenic activities and climate change. An important behavioral trait of the coral holobiont is coral motion, which may play an essential role in feeding, competition, reproduction, and thus survival and fitness. Therefore, characterizing coral behavior through motion analysis will aid our understanding of basic biological and physical coral functions. However, tissue motion in the stony scleractinian corals that contribute most to coral reef construction are subtle and may be imperceptible to both the human eye and commonly used imaging techniques. Here we propose and apply a systematic approach to quantify and visualize subtle coral motion across a series of light and dark cycles in the scleractinian coral Montipora capricornis. We use digital image correlation and optical flow techniques to quantify and characterize minute coral motions under different light conditions. In addition, as a visualization tool, motion magnification algorithm magnifies coral motions in different frequencies, which explicitly displays the distinctive dynamic modes of coral movement. Specifically, our assessment of displacement, strain, optical flow, and mode shape quantify coral motion under different light conditions, and they all show that M. capricornis exhibits more active motions at night compared to day. Our approach provides an unprecedented insight into micro-scale coral movement and behavior through macro-scale digital imaging, thus offering a useful empirical toolset for the coral research community.

摘要

珊瑚礁生态系统支持着大量的生物活动,并拥有巨大的多样性,但它们正面临着由人为活动和气候变化驱动的严重危机。珊瑚共生体的一个重要行为特征是珊瑚运动,它可能在觅食、竞争、繁殖,以及因此的生存和适应能力方面发挥着重要作用。因此,通过运动分析来描述珊瑚的行为将有助于我们理解基本的生物和物理珊瑚功能。然而,在石珊瑚中,对珊瑚礁构建贡献最大的组织运动是微妙的,可能既无法被肉眼察觉,也无法被常用的成像技术察觉。在这里,我们提出并应用了一种系统的方法来量化和可视化石珊瑚 Montipora capricornis 在一系列明暗周期中的微妙运动。我们使用数字图像相关和光流技术来量化和描述不同光照条件下微小的珊瑚运动。此外,作为一种可视化工具,运动放大算法放大了不同频率的珊瑚运动,明确显示了珊瑚运动的独特动态模式。具体来说,我们对位移、应变、光流和模态形状的评估量化了不同光照条件下的珊瑚运动,所有这些都表明,与白天相比,M. capricornis 在夜间表现出更活跃的运动。我们的方法通过宏观尺度的数字成像,为微尺度的珊瑚运动和行为提供了前所未有的洞察,从而为珊瑚研究界提供了一个有用的经验工具集。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6937/8032694/8ef7e4411748/41598_2021_85800_Fig1_HTML.jpg

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