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台湾耐甲氧西林金黄色葡萄球菌 45 型的检测、传播与系统发生。

Detection, spread and phylogeny of meticillin-resistant sequence type 45 in Taiwan.

机构信息

Division of Pediatric Infectious Diseases, Chang Gung Memorial Hospital at Linkou, Kweishan, Taoyuan, Taiwan, Taiwan, ROC.

School of Medicine, Chang Gung University, Kweishan, Taoyuan, Taiwan, Taiwan, ROC.

出版信息

Microb Genom. 2021 Apr;7(4). doi: 10.1099/mgen.0.000555.

Abstract

Meticillin-resistant (MRSA) sequence type (ST) 45 was reported in the literature to have been first identified in 2006 in Taiwan. The present study was carried out to explore and trace the emergence, transmission and evolutional dynamics of MRSA ST45 in Taiwan. We identified MRSA ST45 isolates retrospectively from two collections of MRSA isolates, namely TSAR (Taiwan Surveillance of Antimicrobial Resistance) surveys and the CGMH (Chang Gung Memorial Hospital)-based laboratory collection. Representative ST45 isolates were selected for whole-genome sequencing (WGS) analysis. A total of 9554 MRSA isolates was included in this study. Among the 3766 MRSA isolates biennially collected from TSAR surveys between 1998 and 2014, ST45 accounted for 133 (3.53 %) MRSA isolates, was first identified in 2004, and the prevalence rate peaked in 2010 (up to 10.77 %). Among the 5788 MRSA isolates collected between 1995 and 2017 by the CGMH-based laboratory, 257 isolates (4.44 %) were characterized as ST45, with most identified from nursing homes since 2012. Of the 75 isolates randomly selected for WGS, two clades were identified. The major clade, clade II, comprised 63 isolates and was phylogenetically relatively close to those isolates identified from Singapore. All but one of the isolates in clade I, the minor clade, were identified from non-Taiwanese people, mostly from newly recruited foreign workers in 2017, and were phylogenetically relatively close to one isolate from the USA (CA-347). Conclusively, the emergence of MRSA ST45 strain in Taiwan can be traced back to 2004 and the strain is connected to South-East Asian countries. Since its emergence, transmission and spread of MRSA ST45 has occurred in Taiwan.

摘要

耐甲氧西林金黄色葡萄球菌(MRSA)序列型(ST)45 于文献中首次报道于 2006 年在台湾被发现。本研究旨在探索和追踪 MRSA ST45 在台湾的出现、传播和进化动态。我们从两个耐甲氧西林金黄色葡萄球菌分离株集,即台湾抗生素耐药监测(TSAR)调查和基于长庚纪念医院(CGMH)的实验室收集,回顾性地鉴定了 MRSA ST45 分离株。选择代表性的 ST45 分离株进行全基因组测序(WGS)分析。本研究共纳入 9554 株 MRSA 分离株。在 1998 年至 2014 年期间每两年从 TSAR 调查中收集的 3766 株 MRSA 分离株中,ST45 占 133(3.53%)MRSA 分离株,于 2004 年首次鉴定,2010 年流行率达到高峰(高达 10.77%)。在 1995 年至 2017 年期间由 CGMH 基于实验室收集的 5788 株 MRSA 分离株中,257 株(4.44%)鉴定为 ST45,其中大部分分离株于 2012 年以来从养老院中发现。在随机选择的 75 株 WGS 分离株中,鉴定出两个分支。主要分支,分支 II,包含 63 株,与从新加坡鉴定的分离株在系统发育上较为接近。分支 I 中的除一株外,其余分离株均来自非台湾人,大多数是 2017 年新招募的外国工人,与来自美国(CA-347)的一株分离株在系统发育上较为接近。总之,MRSA ST45 菌株在台湾的出现可以追溯到 2004 年,该菌株与东南亚国家有关。自出现以来,MRSA ST45 在台湾的传播和扩散一直在发生。

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