Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India.
Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, India.
Phys Rev E. 2021 Mar;103(3-1):032411. doi: 10.1103/PhysRevE.103.032411.
In this work we study the structure-transport property relationships of small ligand intercalated DNA molecules using a multiscale modeling approach where extensive ab initio calculations are performed on numerous MD-simulated configurations of dsDNA and dsDNA intercalated with two different intercalators, ethidium and daunomycin. DNA conductance is found to increase by one order of magnitude upon drug intercalation due to the local unwinding of the DNA base pairs adjacent to the intercalated sites, which leads to modifications of the density of states in the near-Fermi-energy region of the ligand-DNA complex. Our study suggests that the intercalators can be used to enhance or tune the DNA conductance, which opens new possibilities for their potential applications in nanoelectronics.
在这项工作中,我们使用多尺度建模方法研究了小分子配体嵌入 DNA 分子的结构-输运性质关系,其中对大量 MD 模拟的 dsDNA 构型和嵌入两种不同嵌入剂(吖啶和道诺霉素)的 dsDNA 进行了广泛的从头算计算。由于嵌入部位附近的 DNA 碱基对局部解开,药物嵌入会使 DNA 电导率增加一个数量级,这导致配体-DNA 复合物近费米能级区域的态密度发生变化。我们的研究表明,嵌入剂可用于增强或调节 DNA 电导率,这为它们在纳米电子学中的潜在应用开辟了新的可能性。