Institute of Biocomputation and Physics of Complex Systems (BIFI), Joint Units IQFR-CSIC-BIFI, and GBsC-CSIC-BIFI, Department of Biochemistry and Molecular and Cell Biology, Universidad de Zaragoza, Zaragoza, Spain.
Aragon Institute for Health Research (IIS Aragon), Zaragoza, Spain.
Eur Biophys J. 2021 May;50(3-4):429-451. doi: 10.1007/s00249-021-01523-7. Epub 2021 Apr 16.
A small-scale ITC benchmarking study was performed involving 9 biophysics laboratories/facilities, to evaluate inter-laboratory and intra-laboratory basal levels of uncertainty. Our prime goal was to assess a number of important factors that can influence both the data gathered by this technique and the thermodynamic parameter values derived therefrom. In its first part, the study involved 5 laboratories and 13 different instruments, working with centrally prepared samples and the same experimental protocol. The second part involved 4 additional laboratories and 6 more instruments, where the users prepared their own samples according to provided instructions and did the experiments following the same protocol as in the first part. The study design comprised: (1) selecting a minimal set of laboratories; (2) providing very stable samples; (3) providing samples not requiring preparation or manipulation; and (4) providing a well-defined and detailed experimental protocol. Thus, we were able to assess: (i) the variability due to instrument and data analysis performed by each user on centrally prepared samples; (ii) the comparability of data retrieved when using 4 different software packages to analyze the same data, besides the data analysis carried out by the different users on their own experimental results; and (iii) the variability due to local sample preparation (second part of the study). Individual values, as well as averages and standard deviations for the binding parameters for EDTA-cation interaction, were used as metrics for comparing the equilibrium association constant (logK), enthalpy of interaction (ΔH), and the so-called "stoichiometry" (n), a concentration-correction factor.
进行了一项小规模的 ITC 基准测试研究,涉及 9 个生物物理实验室/设施,以评估实验室间和实验室内部的基本不确定度水平。我们的主要目标是评估一些可能影响该技术收集的数据以及从中得出的热力学参数值的重要因素。在第一部分,该研究涉及 5 个实验室和 13 种不同的仪器,使用集中制备的样品和相同的实验方案进行工作。第二部分涉及 4 个额外的实验室和 6 个额外的仪器,用户根据提供的说明制备自己的样品,并按照第一部分的相同方案进行实验。研究设计包括:(1)选择最小数量的实验室;(2)提供非常稳定的样品;(3)提供无需制备或操作的样品;(4)提供定义明确和详细的实验方案。因此,我们能够评估:(i)每个用户对集中制备的样品进行仪器和数据分析引起的可变性;(ii)使用 4 种不同软件包分析相同数据时获取的数据的可比性,以及不同用户在自己的实验结果上进行的数据分析;(iii)由于本地样品制备引起的可变性(研究的第二部分)。个体值以及 EDTA-阳离子相互作用的结合参数的平均值和标准偏差,被用作比较平衡缔合常数(logK)、相互作用焓(ΔH)和所谓的“化学计量”(n),即浓度校正因子的指标。