Microbiology and Functionality Research Group, World Institute of Kimchi, Gwangju, 61755, Korea.
Division of Environmental Science and Ecological Engineering, Korea University, Seoul, 02841, Korea.
Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x.
ODFM is a data management system that integrates comprehensive omics information for microorganisms associated with various fermented foods, additive ingredients, and seasonings (e.g. kimchi, Korean fermented vegetables, fermented seafood, solar salt, soybean paste, vinegar, beer, cheese, sake, and yogurt). The ODFM archives genome, metagenome, metataxonome, and (meta)transcriptome sequences of fermented food-associated bacteria, archaea, eukaryotic microorganisms, and viruses; 131 bacterial, 38 archaeal, and 28 eukaryotic genomes are now available to users. The ODFM provides both the Basic Local Alignment Search Tool search-based local alignment function as well as average nucleotide identity-based genetic relatedness measurement, enabling gene diversity and taxonomic analyses of an input query against the database. Genome sequences and annotation results of microorganisms are directly downloadable, and the microbial strains registered in the archive library will be available from our culture collection of fermented food-associated microorganisms. The ODFM is a comprehensive database that covers the genomes of an entire microbiome within a specific food ecosystem, providing basic information to evaluate microbial isolates as candidate fermentation starters for fermented food production.
ODFM 是一个数据管理系统，集成了与各种发酵食品、添加剂成分和调味料（如泡菜、韩国发酵蔬菜、发酵海鲜、日晒盐、大酱、醋、啤酒、奶酪、清酒和酸奶）相关的微生物的综合组学信息。ODFM 归档了与发酵食品相关的细菌、古菌、真核微生物和病毒的基因组、宏基因组、宏分类组和（宏）转录组序列；现在可供用户使用的有 131 个细菌、38 个古菌和 28 个真核生物基因组。ODFM 提供了基于基本局部比对搜索工具的局部比对功能以及基于平均核苷酸同一性的遗传相关性测量，使用户能够对输入查询与数据库进行基因多样性和分类分析。微生物的基因组序列和注释结果可直接下载，并且档案库中注册的微生物菌株将可从我们的发酵食品相关微生物培养物收藏中获得。ODFM 是一个全面的数据库，涵盖了特定食品生态系统中整个微生物组的基因组，为评估微生物分离物作为发酵食品生产的候选发酵剂提供了基本信息。
