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德氏乳杆菌保加利亚亚种 LBP UFSC 2230 基因组草图:CLA 代谢相关酶初步鉴定的工具。

Draft genome sequence of Lactobacillus delbrueckii subsp. bulgaricus LBP UFSC 2230: a tool for preliminary identification of enzymes involved in CLA metabolism.

机构信息

Department of Food Science and Technology, Federal University of Santa Catarina, Florianópolis, SC, 88034-001, Brazil.

Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88034-001, Brazil.

出版信息

Braz J Microbiol. 2021 Sep;52(3):1557-1563. doi: 10.1007/s42770-021-00479-2. Epub 2021 Apr 23.

Abstract

Several Lactobacillus ssp. are recognized as potential conjugated linoleic acid (CLA) producers. We have previously reported the ability of a range of Lactobacillus delbrueckii subsp. bulgaricus strains to produce CLA in fermented milk, being a potential candidate for the fermented dairy food chain. This study reports the draft genome sequence of L. bulgaricus strain LBP UFSC 2230, isolated from Italian Grana Padano cheese. Draft genome sequence originated in a total of 4,310,842 paired-end reads that were quality trimmed and assembled into 135 contigs with a total length of 604,745,873 bp, including 2086 protein coding genes and an average GC content of 49.7%. Draft genome sequence represents an important tool to identify the enzymes involved in this strain's CLA metabolism. We identified a gene encoding an enzyme involved in biohydrogenation of linoleic acid pathway, oleate hydratase.

摘要

几种乳杆菌被认为是潜在的共轭亚油酸(CLA)生产菌。我们之前曾报道过一系列德氏乳杆菌保加利亚亚种菌株在发酵乳中产生 CLA 的能力,这使其成为发酵乳制品链中的潜在候选菌株。本研究报告了从意大利格拉纳·帕达诺奶酪中分离出的乳杆菌菌株 LBP UFSC 2230 的基因组草图序列。基因组草图序列来源于总共 4310842 对末端读取,经过质量修剪后,组装成 135 个 contigs,总长度为 604745873bp,其中包含 2086 个蛋白编码基因,GC 含量平均为 49.7%。基因组草图序列是鉴定该菌株 CLA 代谢相关酶的重要工具。我们鉴定了一个编码参与亚油酸途径生物氢化的酶的基因,即油酸水解酶。

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