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建立重组酶聚合酶扩增检测方法,用于快速、可视化检测感染大熊猫的犬瘟热病毒。

Development of recombinase polymerase amplification assays for rapid and visual detection of canine distemper virus infecting giant panda.

机构信息

College of Veterinary Medicine, Jilin Agricultural University, Changchun, China.

Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.

出版信息

BMC Vet Res. 2021 Apr 23;17(1):172. doi: 10.1186/s12917-021-02880-3.

Abstract

BACKGROUND

Canine distemper virus (CDV) is an enveloped negative-strand RNA virus that exhibits a high mutation rate and continuously expands the range of hosts. Notably, CDV has infected giant panda with spill over from viral reservoirs in canines. Giant pandas (Ailuropoda melanoleuca), especially captive pandas, are known to be susceptible to natural infection with CDV. The high fatality rate of CDV poses a serious threat to the safety of the giant panda population. However, vaccines or drugs for canine distemper in giant pandas have not been developed to date. Therefore, a rapid test that can achieve accurate onsite detection of CDV is important to enable the timely implementation of control measures. In this study, we established a nucleic acid visualization assay for targeting the CDV N gene by using combines reverse transcription recombinase polymerase amplification with a closed vertical flow visualization strip (RT-RPA-VF).

RESULTS

The RT-RPA-VF assay does not require sophisticated equipment, and it was determined to provide rapid detection at 35 °C for 30 min, while the limit of detection was 5 × 10 copies/μl RNA transcripts and 10 TCID ml viruses. The results showed that the assay was high specific to CDV and had no cross-reactivity with other viruses infecting the giant panda. Compared with RT-qPCR, RT-RPA-VF assay had a sensitivity of 100% and a specificity of 100% in 29 clinical samples. The coincidence rate between RT-RPA-VF and RT-qPCR was 100% (kappa = 1), indicating that the RT-RPA-VF assay possessed good diagnostic performance on clinical samples.

CONCLUSIONS

The RT-RPA-VF provides a novel alternative for the simple, sensitive, and specific identification of CDV and showed great potential for point of care diagnostics for captive and wild giant panda.

摘要

背景

犬瘟热病毒(CDV)是一种包膜负链 RNA 病毒,具有很高的突变率,并不断扩大宿主范围。值得注意的是,CDV 已从犬类病毒库感染了大熊猫。大熊猫(Ailuropoda melanoleuca),尤其是圈养的大熊猫,已知易受 CDV 的自然感染。CDV 的高死亡率对大熊猫种群的安全构成严重威胁。然而,目前尚未开发针对大熊猫的犬瘟热疫苗或药物。因此,能够实现现场准确检测 CDV 的快速检测方法对于及时实施控制措施非常重要。在本研究中,我们建立了一种针对 CDV N 基因的核酸可视化检测方法,该方法结合了逆转录重组酶聚合酶扩增和封闭式垂直流可视化条带(RT-RPA-VF)。

结果

RT-RPA-VF 检测法不需要复杂的设备,可在 35°C 下快速检测 30 分钟,检测下限为 5×10 拷贝/μl RNA 转录本和 10TCID ml 病毒。结果表明,该检测方法对 CDV 具有高度特异性,与感染大熊猫的其他病毒无交叉反应。与 RT-qPCR 相比,RT-RPA-VF 检测法在 29 份临床样本中的敏感性为 100%,特异性为 100%。RT-RPA-VF 和 RT-qPCR 的符合率为 100%(kappa=1),表明 RT-RPA-VF 检测法对临床样本具有良好的诊断性能。

结论

RT-RPA-VF 为简单、敏感和特异性鉴定 CDV 提供了一种新的选择,并显示出在圈养和野生大熊猫即时诊断方面的巨大潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f85e/8066846/19dbe8e8df97/12917_2021_2880_Fig1_HTML.jpg

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