Li Mingai, Xu Jia, Lyu Fuling, Khomenko Iuliia, Biasioli Franco, Villani Mariacristina, Baldan Barbara, Varotto Claudio
Department of Biodiversity and Molecular Ecology, Research and Innovation Centre Fondazione Edmund Mach San Michele all'Adige Italy.
Experimental Center of Forestry in North China Chinese Academy of Forestry Beijing China.
Evol Appl. 2020 Dec 14;14(4):902-914. doi: 10.1111/eva.13169. eCollection 2021 Apr.
Isoprene synthase (IspS) is the sole enzyme in plants responsible for the yearly emission in the atmosphere of thousands of tonnes of the natural hydrocarbon isoprene worldwide. Species of the monocotyledonous family Arecaceae (palms) are among the highest plant emitters, but to date no gene from this family has been identified. Here, we screened with PTR-ToF-MS 18 genera of the Arecaceae for isoprene emission and found that the majority of the sampled species emits isoprene. Putative genes from six different genera were sequenced and three of them were functionally characterized by heterologous overexpression in , demonstrating that they encode functional IspS genes. Site-directed mutagenesis and expression in Arabidopsis demonstrated the functional relevance of a novel IspS diagnostic tetrad from Arecaceae, whose most variable amino acids could not preserve catalytic function when substituted by a putatively dicotyledonous-specific tetrad. In particular, mutation of threonine 479 likely impairs the open-closed transition of the enzyme by altering the network of hydrogen bonds between helices H1α, H, and I. These results shed new light on the evolution of IspS in monocots, suggesting that isoprene emission is an ancestral trait within the Arecaceae family. The identification of IspS from Arecaceae provides promising novel enzymes for the production of isoprene in heterologous systems and allows the screening and selection of commercially relevant palm varieties with lower environmental impact.
异戊二烯合酶(IspS)是植物中唯一负责每年向大气中排放全球数千吨天然碳氢化合物异戊二烯的酶。单子叶植物棕榈科(棕榈)的物种是植物中异戊二烯排放量最高的物种之一,但迄今为止,尚未从该科中鉴定出相关基因。在这里,我们使用质子转移反应飞行时间质谱仪(PTR-ToF-MS)对棕榈科的18个属进行了异戊二烯排放筛选,发现大多数采样物种都能排放异戊二烯。对来自六个不同属的推定基因进行了测序,并通过在[具体物种]中的异源过表达对其中三个基因进行了功能表征,证明它们编码功能性IspS基因。定点诱变和在拟南芥中的表达证明了棕榈科一种新型IspS诊断四联体的功能相关性,当被推测为双子叶植物特异性的四联体取代时,其最可变的氨基酸无法保留催化功能。特别是,苏氨酸479的突变可能通过改变螺旋H1α、H和I之间的氢键网络来损害酶的开闭转变。这些结果为单子叶植物中IspS的进化提供了新的线索,表明异戊二烯排放是棕榈科的一个祖先特征。从棕榈科鉴定出IspS为在异源系统中生产异戊二烯提供了有前景的新型酶,并有助于筛选和选择对环境影响较小的商业相关棕榈品种。