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本文引用的文献

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Genome-wide identification and expression analysis of YTH domain-containing RNA-binding protein family in common wheat.小麦 YTH 结构域包含 RNA 结合蛋白家族的全基因组鉴定和表达分析。
BMC Plant Biol. 2020 Jun 23;20(1):351. doi: 10.1186/s12870-020-02505-1.
2
QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.QQS 孤儿基因及其互作因子 NF-YC4 降低对病原体和害虫的易感性。
Plant Biotechnol J. 2019 Jan;17(1):252-263. doi: 10.1111/pbi.12961. Epub 2018 Jul 6.
3
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.Araport11:拟南芥参考基因组的完整重新注释。
Plant J. 2017 Feb;89(4):789-804. doi: 10.1111/tpj.13415. Epub 2017 Feb 10.
4
Phosphoinositide signaling in plant development.植物发育中的磷酸肌醇信号传导
Development. 2016 Jun 15;143(12):2044-55. doi: 10.1242/dev.136432.
5
The Pfam protein families database: towards a more sustainable future.Pfam蛋白质家族数据库:迈向更可持续的未来。
Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. doi: 10.1093/nar/gkv1344. Epub 2015 Dec 15.
6
QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.QQS孤儿基因通过与NF-YC相互作用调控跨物种的碳氮分配。
Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14734-9. doi: 10.1073/pnas.1514670112. Epub 2015 Nov 9.
7
Proteins of Unknown Biochemical Function: A Persistent Problem and a Roadmap to Help Overcome It.生化功能未知的蛋白质:一个长期存在的问题及帮助克服该问题的路线图。
Plant Physiol. 2015 Nov;169(3):1436-42. doi: 10.1104/pp.15.00959. Epub 2015 Aug 12.
8
ABNORMAL POLLEN TUBE GUIDANCE1, an Endoplasmic Reticulum-Localized Mannosyltransferase Homolog of GLYCOSYLPHOSPHATIDYLINOSITOL10 in Yeast and PHOSPHATIDYLINOSITOL GLYCAN ANCHOR BIOSYNTHESIS B in Human, Is Required for Arabidopsis Pollen Tube Micropylar Guidance and Embryo Development.异常花粉管导向1,一种酵母中糖基磷脂酰肌醇10的内质网定位甘露糖基转移酶同源物以及人类中的磷脂酰肌醇聚糖锚生物合成B,是拟南芥花粉管珠孔导向和胚胎发育所必需的。
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9
Cell wall-related proteins of unknown function: missing links in plant cell wall development.功能未知的细胞壁相关蛋白:植物细胞壁发育中的缺失环节
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10
Inositol polyphosphate 5-phosphatase-controlled Ins(1,4,5)P3/Ca2+ is crucial for maintaining pollen dormancy and regulating early germination of pollen.肌醇多磷酸 5-磷酸酶调控的 Ins(1,4,5)P3/Ca2+ 对于维持花粉休眠和调节花粉的早期萌发至关重要。
Development. 2012 Jun;139(12):2221-33. doi: 10.1242/dev.081224. Epub 2012 May 9.

基因家族在 中的特征分析。

Characterization of the gene family in .

机构信息

National Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, China.

出版信息

Plant Signal Behav. 2021 Jun 3;16(6):1913301. doi: 10.1080/15592324.2021.1913301. Epub 2021 Apr 27.

DOI:10.1080/15592324.2021.1913301
PMID:33906568
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8143257/
Abstract

Plant genomes encode numerous proteins with obscure features (POFs) that lack recognized domains or motifs. However, there is little functional information for POFs even in because biochemical, physiological, and genetic assay are required for the functional annotations of POFs. Here, we identified a small gene family, the endoplasmic reticulum-localized POF (ERP) family, in . Phylogenetic analysis revealed that the number of ERP family members was conserved in the plant kingdom, suggesting strong selective pressure was imposed on ERP family during plant evolution. No recognizable domains were identified in the predicted ERP proteins, except for the N-terminal signal peptide. ERPs were found to be widely expressed during development and showed endoplasmic reticulum localization. It was reported that is an inositol-1,4,5-trisphosphate 5-phosphatase (5PTase), but could not substitute for in precocious pollen germination, indicating that did not have the similar functions as in inositol 1,4,5-trisphosphate [Ins(1,4,5)] metabolism. Further studies are needed to dissect the functions of ERP family proteins in development.

摘要

植物基因组编码了许多具有模糊特征(POF)的蛋白质,这些蛋白质缺乏公认的结构域或基序。然而,即使在 中,也几乎没有关于 POF 的功能信息,因为需要进行生化、生理和遗传测定来对 POF 进行功能注释。在这里,我们在 中鉴定了一个小的基因家族,内质网定位的 POF(ERP)家族。系统发育分析表明,ERP 家族成员的数量在植物界是保守的,这表明在植物进化过程中,ERP 家族受到了强烈的选择压力。除了 N 端信号肽外,预测的 ERP 蛋白中没有发现可识别的结构域。ERP 蛋白在 发育过程中广泛表达,并表现出内质网定位。有报道称 是肌醇 1,4,5-三磷酸 5-磷酸酶(5PTase),但 不能替代 在花粉提前萌发中的作用,表明 在肌醇 1,4,5-三磷酸 [Ins(1,4,5)]代谢中没有与 相似的功能。需要进一步研究来剖析 ERP 家族蛋白在 发育中的功能。