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溶细胞性感染小鼠γ疱疹病毒 68 激活宿主和病毒 RNA 聚合酶 III 启动子并增强非编码 RNA 表达。

Lytic Infection with Murine Gammaherpesvirus 68 Activates Host and Viral RNA Polymerase III Promoters and Enhances Noncoding RNA Expression.

机构信息

Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.

Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA.

出版信息

J Virol. 2021 Jun 24;95(14):e0007921. doi: 10.1128/JVI.00079-21.

Abstract

RNA polymerase III (pol III) transcribes multiple noncoding RNAs (ncRNAs) that are essential for cellular function. Pol III-dependent transcription is also engaged during certain viral infections, including those of the gammaherpesviruses (γHVs), where pol III-dependent viral ncRNAs promote pathogenesis. Additionally, several host ncRNAs are upregulated during γHV infection and play integral roles in pathogenesis by facilitating viral establishment and gene expression. Here, we sought to investigate how pol III promoters and transcripts are regulated during gammaherpesvirus infection using the murine gammaherpesvirus 68 (γHV68) system. To compare the transcription of host and viral pol III-dependent ncRNAs, we analyzed a series of pol III promoters for host and viral ncRNAs using a luciferase reporter optimized to measure pol III activity. We measured promoter activity from the reporter gene at the translation level via luciferase activity and at the transcription level via reverse transcription-quantitative PCR (RT-qPCR). We further measured endogenous ncRNA expression at single-cell resolution by flow cytometry. These studies demonstrated that lytic infection with γHV68 increased the transcription from multiple host and viral pol III promoters and further identified the ability of accessory sequences to influence both baseline and inducible promoter activity after infection. RNA flow cytometry revealed the induction of endogenous pol III-derived ncRNAs that tightly correlated with viral gene expression. These studies highlight how lytic gammaherpesvirus infection alters the transcriptional landscape of host cells to increase pol III-derived RNAs, a process that may further modify cellular function and enhance viral gene expression and pathogenesis. Gammaherpesviruses are a prime example of how viruses can alter the host transcriptional landscape to establish infection. Despite major insights into how these viruses modify RNA polymerase II-dependent generation of messenger RNAs, how these viruses influence the activity of host RNA polymerase III remains much less clear. Small noncoding RNAs produced by RNA polymerase III are increasingly recognized to play critical regulatory roles in cell biology and virus infection. Studies of RNA polymerase III-dependent transcription are complicated by multiple promoter types and diverse RNAs with variable stability and processing requirements. Here, we characterized a reporter system to directly study RNA polymerase III-dependent responses during gammaherpesvirus infection and utilized single-cell flow cytometry-based methods to reveal that gammaherpesvirus lytic replication broadly induces pol III activity to enhance host and viral noncoding RNA expression within the infected cell.

摘要

RNA 聚合酶 III(pol III)转录多种非编码 RNA(ncRNA),这些 RNA 对细胞功能至关重要。pol III 依赖性转录也发生在某些病毒感染期间,包括γ 疱疹病毒(γHV)的感染,其中 pol III 依赖性病毒 ncRNA 促进发病机制。此外,在 γHV 感染期间,几种宿主 ncRNA 上调,并通过促进病毒建立和基因表达在发病机制中发挥重要作用。在这里,我们使用鼠 γ 疱疹病毒 68(γHV68)系统研究了 pol III 启动子和转录物在 γ 疱疹病毒感染期间是如何被调控的。为了比较宿主和病毒 pol III 依赖性 ncRNA 的转录,我们使用优化的荧光素酶报告基因分析了一系列宿主和病毒 pol III 依赖性 ncRNA 的启动子。我们通过荧光素酶活性测量报告基因在翻译水平上的启动子活性,通过反转录定量 PCR(RT-qPCR)测量转录水平上的启动子活性。我们还通过流式细胞术以单细胞分辨率测量内源性 ncRNA 的表达。这些研究表明,γHV68 的裂解感染增加了多个宿主和病毒 pol III 启动子的转录,并进一步确定了辅助序列在感染后影响基础和诱导启动子活性的能力。RNA 流式细胞术揭示了内源性 pol III 衍生 ncRNA 的诱导,该诱导与病毒基因表达紧密相关。这些研究强调了裂解性 γ 疱疹病毒感染如何改变宿主细胞的转录谱以增加 pol III 衍生的 RNA,这一过程可能进一步改变细胞功能并增强病毒基因表达和发病机制。γ 疱疹病毒是病毒如何改变宿主转录谱以建立感染的一个很好的例子。尽管人们对这些病毒如何修饰 RNA 聚合酶 II 依赖性信使 RNA 的生成有了重要的认识,但这些病毒如何影响宿主 RNA 聚合酶 III 的活性仍然不太清楚。由 RNA 聚合酶 III 产生的小非编码 RNA 越来越被认为在细胞生物学和病毒感染中发挥关键的调控作用。RNA 聚合酶 III 依赖性转录的研究受到多种启动子类型和具有不同稳定性和加工要求的不同 RNA 的复杂性的限制。在这里,我们描述了一个报告系统,用于直接研究 γ 疱疹病毒感染期间 RNA 聚合酶 III 依赖性反应,并利用基于单细胞流式细胞术的方法揭示了 γ 疱疹病毒裂解复制广泛诱导 pol III 活性,以增强感染细胞中宿主和病毒非编码 RNA 的表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba27/8223928/03ae64b3316b/jvi.00079-21-f0001.jpg

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