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神经丝的黏弹性响应:一种原子模拟方法。

Viscoelastic Response of Neurofilaments: An Atomistic Simulation Approach.

机构信息

Department of Mechanical and Aerospace Engineering, University of Texas at Arlington, Arlington, TX 76019, USA.

出版信息

Biomolecules. 2021 Apr 7;11(4):540. doi: 10.3390/biom11040540.

DOI:10.3390/biom11040540
PMID:33917073
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8067762/
Abstract

Existent literature has limitations regarding the mechanical behavior of axonal cytoskeletal components in a high strain rate scenario, which is mainly due to limitations regarding the structure of some components such as tau protein and neurofilaments (NF). This study performs molecular dynamics (MD) simulations on NFs to extract their strain rate-dependent behavior. It is found that they are highly stretchable and show multiple stages of unfolding. Furthermore, NFs show high tensile stiffness. Also, viscoelastic modeling shows that they correspond to simplified viscoelastic models. This study effectively enhances the existent axonal models focusing on axonal injury.

摘要

现有文献在高应变速率情况下对轴突细胞骨架成分的力学行为研究存在局限性,这主要是由于一些成分(如 tau 蛋白和神经微丝(NF))的结构限制所致。本研究对 NF 进行分子动力学(MD)模拟,以提取其应变速率相关行为。结果表明,NF 具有高度的可拉伸性,并表现出多个展开阶段。此外,NF 表现出高拉伸刚度。此外,粘弹性建模表明它们对应于简化的粘弹性模型。本研究有效增强了现有的关注轴突损伤的轴突模型。

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1
Viscoelastic Response of Neurofilaments: An Atomistic Simulation Approach.神经丝的黏弹性响应:一种原子模拟方法。
Biomolecules. 2021 Apr 7;11(4):540. doi: 10.3390/biom11040540.
2
Effect of Strain Rate on Single Tau, Dimerized Tau and Tau-Microtubule Interface: A Molecular Dynamics Simulation Study.应变率对单 Tau、二聚化 Tau 和 Tau-微管界面的影响:分子动力学模拟研究。
Biomolecules. 2021 Sep 4;11(9):1308. doi: 10.3390/biom11091308.
3
Neurofilaments form a highly stable stationary cytoskeleton after reaching a critical level in axons.神经丝在轴突中达到临界水平后形成高度稳定的固定细胞骨架。
J Neurosci. 2009 Sep 9;29(36):11316-29. doi: 10.1523/JNEUROSCI.1942-09.2009.
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Slow axonal transport mechanisms move neurofilaments relentlessly in mouse optic axons.慢速轴突运输机制使神经丝在小鼠视神经轴突中持续移动。
J Cell Biol. 1992 May;117(3):607-16. doi: 10.1083/jcb.117.3.607.
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On the atomistic-based continuum viscoelastic constitutive relations for axonal microtubules.基于原子的轴突微管粘弹性本构关系的连续统。
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The dazzling rise of neurofilaments: Physiological functions and roles as biomarkers.神经丝的惊人崛起:生理功能和作为生物标志物的作用。
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引用本文的文献

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Viscoelastic damage evaluation of the axon.轴突的粘弹性损伤评估
Front Bioeng Biotechnol. 2022 Oct 6;10:904818. doi: 10.3389/fbioe.2022.904818. eCollection 2022.
2
Shock-Induced Damage Mechanism of Perineuronal Nets.神经周细胞网络的休克诱导损伤机制。
Biomolecules. 2021 Dec 22;12(1):10. doi: 10.3390/biom12010010.
3
Effect of Strain Rate on Single Tau, Dimerized Tau and Tau-Microtubule Interface: A Molecular Dynamics Simulation Study.应变率对单 Tau、二聚化 Tau 和 Tau-微管界面的影响:分子动力学模拟研究。

本文引用的文献

1
Domain focused and residue focused phosphorylation effect on tau protein: A molecular dynamics simulation study.结构域聚焦和残基聚焦的磷酸化对tau蛋白的影响:一项分子动力学模拟研究。
J Mech Behav Biomed Mater. 2021 Jan;113:104149. doi: 10.1016/j.jmbbm.2020.104149. Epub 2020 Oct 21.
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Electrostatics of Tau Protein by Molecular Dynamics.tau 蛋白的分子动力学静电势。
Biomolecules. 2019 Mar 23;9(3):116. doi: 10.3390/biom9030116.
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Damage and Failure of Axonal Microtubule under Extreme High Strain Rate: An In-Silico Molecular Dynamics Study.
Biomolecules. 2021 Sep 4;11(9):1308. doi: 10.3390/biom11091308.
极端高应变速率下轴突微管的损伤与失效:分子动力学的数值模拟研究。
Sci Rep. 2018 Aug 16;8(1):12260. doi: 10.1038/s41598-018-29804-w.
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NF-L in cerebrospinal fluid and serum is a biomarker of neuronal damage in an inducible mouse model of neurodegeneration.在一种可诱导的神经退行性变小鼠模型中,脑脊液和血清中的神经丝轻链是神经元损伤的生物标志物。
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Mechanical Effects of Dynamic Binding between Tau Proteins on Microtubules during Axonal Injury.轴突损伤期间tau蛋白与微管动态结合的力学效应
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Neural Regen Res. 2012 Mar 15;7(8):620-6. doi: 10.3969/j.issn.1673-5374.2012.08.010.
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Neurofilament assembly and function during neuronal development.神经元发育过程中的神经丝组装与功能。
Curr Opin Cell Biol. 2015 Feb;32:92-101. doi: 10.1016/j.ceb.2015.01.003. Epub 2015 Jan 28.
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All-atom empirical potential for molecular modeling and dynamics studies of proteins.蛋白质分子建模和动力学研究的全原子经验势。
J Phys Chem B. 1998 Apr 30;102(18):3586-616. doi: 10.1021/jp973084f.
10
Viscoelasticity of tau proteins leads to strain rate-dependent breaking of microtubules during axonal stretch injury: predictions from a mathematical model.tau蛋白的粘弹性导致轴突拉伸损伤期间微管的应变率依赖性断裂:来自数学模型的预测。
Biophys J. 2014 Mar 4;106(5):1123-33. doi: 10.1016/j.bpj.2014.01.024.