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含脯氨酸的β-转角。IV. 叔丁氧羰基-L-脯氨酰-D-丙氨酸和叔丁氧羰基-L-脯氨酰-D-丙氨酰-L-丙氨酸的晶体和溶液构象。

Proline-containing beta-turns. IV. Crystal and solution conformations of tert.-butyloxycarbonyl-L-prolyl-D-alanine and tert.-butyloxycarbonyl-L-prolyl-D-alanyl-L-alanine.

作者信息

Ananthanarayanan V S, Cameron T S

机构信息

Department of Biochemistry, Memorial University of Newfoundland, St. John's, Canada.

出版信息

Int J Pept Protein Res. 1988 Apr;31(4):399-411.

PMID:3391745
Abstract

The conformations of the dipeptide t-Boc-Pro-DAla-OH and the tripeptide t-Boc-Pro-DAla-Ala-OH have been determined in the crystalline state by X-ray diffraction and in solution by CD, n.m.r. and i.r. techniques. The unit cell of the dipeptide crystal contains two independent molecules connected by intermolecular hydrogen bonds. The urethane-proline peptide bond is in the cis orientation in both the molecular forms while the peptide bond between Pro and DAla is in the trans orientation. The single dipeptide molecule exhibits a "bent" structure which approximates to a partial beta-turn. The tripeptide adopts the 4----1 hydrogen-bonded type II beta-turn with all trans peptide bonds. In solution, the CD and i.r. data on the dipeptide indicate an ordered conformation with an intramolecular hydrogen bond. N.m.r. data indicate a significant proportion of the conformer with a trans orientation at the urethane-proline peptide bond. The temperature coefficient of the amide proton of this conformer in DMSO-d6 points to a 3----1 intramolecular hydrogen bond. Taken together, the data on the dipeptide in solution indicate the presence (in addition to the cis conformer) of a C7 conformation which is absent in the crystalline state. The spectral data on the tripeptide indicate the presence of the type II beta-turn in solution in addition to the nonhydrogen-bonded conformer with the cis peptide bond between the urethane and proline residues. The relevance of these data to studies on the substrate specificity of collagen prolylhydroxylase is pointed out.

摘要

通过X射线衍射在晶体状态下以及通过圆二色光谱(CD)、核磁共振(n.m.r.)和红外光谱(i.r.)技术在溶液中测定了二肽t-Boc-Pro-DAla-OH和三肽t-Boc-Pro-DAla-Ala-OH的构象。二肽晶体的晶胞包含通过分子间氢键相连的两个独立分子。在两种分子形式中,氨基甲酸酯 - 脯氨酸肽键均处于顺式取向,而脯氨酸和DAla之间的肽键处于反式取向。单个二肽分子呈现出一种“弯曲”结构,近似于部分β-转角。三肽采用所有肽键均为反式的4→1氢键连接的II型β-转角。在溶液中,二肽的CD和i.r.数据表明存在具有分子内氢键的有序构象。N.m.r.数据表明在氨基甲酸酯 - 脯氨酸肽键处具有反式取向的构象异构体占相当比例。该构象异构体在氘代二甲亚砜(DMSO-d6)中酰胺质子的温度系数表明存在3→1分子内氢键。综合来看,溶液中二肽的数据表明(除了顺式构象异构体之外)存在晶体状态中不存在的C7构象。三肽的光谱数据表明,除了在氨基甲酸酯和脯氨酸残基之间具有顺式肽键的非氢键连接构象异构体之外,溶液中还存在II型β-转角。指出了这些数据与胶原蛋白脯氨酰羟化酶底物特异性研究的相关性。

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