From the Department of Biological Sciences, Purdue University, 915 W. State St., LILY G-227, West Lafayette, IN, 47907, USA.
Department of Computer Science, Purdue University, West Lafayette, IN, 47907, USA.
Cell Stress Chaperones. 2021 Jul;26(4):639-656. doi: 10.1007/s12192-021-01208-2. Epub 2021 May 3.
Fic (filamentation induced by cAMP) proteins regulate diverse cell signaling events by post-translationally modifying their protein targets, predominantly by the addition of an AMP (adenosine monophosphate). This modification is called Fic-mediated adenylylation or AMPylation. We previously reported that the human Fic protein, HYPE/FicD, is a novel regulator of the unfolded protein response (UPR) that maintains homeostasis in the endoplasmic reticulum (ER) in response to stress from misfolded proteins. Specifically, HYPE regulates UPR by adenylylating the ER chaperone, BiP/GRP78, which serves as a sentinel for UPR activation. Maintaining ER homeostasis is critical for determining cell fate, thus highlighting the importance of the HYPE-BiP interaction. Here, we study the kinetic and structural parameters that determine the HYPE-BiP interaction. By measuring the binding and kinetic efficiencies of HYPE in its activated (Adenylylation-competent) and wild type (de-AMPylation-competent) forms for BiP in its wild type and ATP-bound conformations, we determine that HYPE displays a nearly identical preference for the wild type and ATP-bound forms of BiP in vitro and preferentially de-AMPylates the wild type form of adenylylated BiP. We also show that AMPylation at BiP's Thr366 versus Thr518 sites differentially affect its ATPase activity, and that HYPE does not adenylylate UPR accessory proteins like J-protein ERdJ6. Using molecular docking models, we explain how HYPE is able to adenylylate Thr366 and Thr518 sites in vitro. While a physiological role for AMPylation at both the Thr366 and Thr518 sites has been reported, our molecular docking model supports Thr518 as the structurally preferred modification site. This is the first such analysis of the HYPE-BiP interaction and offers critical insights into substrate specificity and target recognition.
Fic(环化 AMP 诱导的蛋白质)通过翻译后修饰其蛋白质靶标,主要通过添加 AMP(单磷酸腺苷)来调节多种细胞信号事件。这种修饰被称为 Fic 介导的腺苷酰化或 AMP 化。我们之前报道过,人 Fic 蛋白 HYPE/FicD 是未折叠蛋白反应 (UPR) 的新型调节剂,可在蛋白质错误折叠导致内质网 (ER) 应激时维持 ER 内的动态平衡。具体而言,HYPE 通过 AMP 化 ER 伴侣蛋白 BiP/GRP78 来调节 UPR,BiP/GRP78 作为 UPR 激活的监测器。维持 ER 内的动态平衡对于确定细胞命运至关重要,因此突出了 HYPE-BiP 相互作用的重要性。在这里,我们研究了决定 HYPE-BiP 相互作用的动力学和结构参数。通过测量其激活形式(腺苷酰化有效)和野生型(去 AMP 化有效)形式的 HYPE 与野生型和 ATP 结合构象的 BiP 的结合和动力学效率,我们确定 HYPE 在体外对 BiP 的野生型和 ATP 结合形式具有几乎相同的偏好,并优先去 AMP 化腺苷酰化的 BiP 的野生型形式。我们还表明,BiP 的 Thr366 与 Thr518 位点的 AMP 化会对其 ATP 酶活性产生不同的影响,并且 HYPE 不会 AMP 化 UPR 辅助蛋白,如 J 蛋白 ERdJ6。使用分子对接模型,我们解释了 HYPE 如何能够在体外 AMP 化 Thr366 和 Thr518 位点。虽然已经报道了 Thr366 和 Thr518 位点的 AMP 化具有生理作用,但我们的分子对接模型支持 Thr518 作为结构上优选的修饰位点。这是对 HYPE-BiP 相互作用的首次此类分析,为底物特异性和靶标识别提供了关键见解。