从中国温州红树林沉积物中分离的sp. 菌株V3的全基因组序列
Complete Genome Sequence of sp. Strain V3, Isolated from Mangrove Sediments in Wenzhou, China.
作者信息
Yan Ruihua, Michael Shija Vicent, Zhang Guangya, Zeng Runying, Li Xialan
机构信息
Department of Biotechnology and Bioengineering, Huaqiao University, Xiamen, China.
Technology Innovation Center for Exploitation of Marine Biological Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, China.
出版信息
Microbiol Resour Announc. 2021 May 6;10(18):e01448-20. doi: 10.1128/MRA.01448-20.
Abstract
We present the complete genome sequence of sp. strain V3, which was isolated from mangrove sediments from Yanpu Bay, Wenzhou, China. The 4.44-Mb genome sequence of V3 will be useful for studying the functional genes with potential industrial application of this species from mangrove sediments.
摘要
我们公布了sp.菌株V3的完整基因组序列，该菌株是从中国温州沿浦湾的红树林沉积物中分离得到的。V3的444万个碱基对的基因组序列将有助于研究该红树林沉积物物种中具有潜在工业应用价值的功能基因。
相似文献
1
Complete Genome Sequence of sp. Strain V3, Isolated from Mangrove Sediments in Wenzhou, China.从中国温州红树林沉积物中分离的sp. 菌株V3的全基因组序列
Microbiol Resour Announc. 2021 May 6;10(18):e01448-20. doi: 10.1128/MRA.01448-20.
2
Diversity of Bacillus-like bacterial community in the sediments of the Bamenwan mangrove wetland in Hainan, China.中国海南八门湾红树林湿地沉积物中类芽孢杆菌群落的多样性
Can J Microbiol. 2017 Mar;63(3):238-245. doi: 10.1139/cjm-2016-0449. Epub 2016 Nov 28.
3
Complete genome sequence of sp. CCB-MM1, a halophile isolated from Matang Mangrove Forest, Malaysia.从马来西亚马当红树林分离出的嗜盐菌CCB-MM1菌株的全基因组序列。
Stand Genomic Sci. 2017 Jul 6;12:36. doi: 10.1186/s40793-017-0248-0. eCollection 2017.
4
sp. nov., isolated from mangrove sediments.sp. nov.，分离自红树林沉积物。
Int J Syst Evol Microbiol. 2021 Apr;71(4). doi: 10.1099/ijsem.0.004777.
5
Growth kinetics and biodeterioration of polypropylene microplastics by Bacillus sp. and Rhodococcus sp. isolated from mangrove sediment.红树沉积物中分离得到的芽孢杆菌和红球菌对聚丙烯微塑料的生长动力学和生物降解作用。
Mar Pollut Bull. 2018 Feb;127:15-21. doi: 10.1016/j.marpolbul.2017.11.036. Epub 2017 Nov 23.
6
Microbial diversity of mangrove sediment in Shenzhen Bay and gene cloning, characterization of an isolated phytase-producing strain of SPC09 B. cereus.深圳湾红树林沉积物的微生物多样性及一株产植酸酶蜡样芽孢杆菌SPC09的基因克隆与特性分析
Appl Microbiol Biotechnol. 2015 Jun;99(12):5339-50. doi: 10.1007/s00253-015-6405-8. Epub 2015 Feb 3.
7
Complete Genome Sequence of sp. Strain SHP22-7, a New Species Isolated from Mangrove of Enggano Island, Indonesia.从印度尼西亚恩加诺岛红树林中分离出的新物种SHP22-7菌株的全基因组序列
Microbiol Resour Announc. 2018 Nov 21;7(20). doi: 10.1128/MRA.01317-18. eCollection 2018 Nov.
8
How mangrove plants affect microplastic distribution in sediments of coastal wetlands: Case study in Shenzhen Bay, South China.红树林植物如何影响滨海湿地沉积物中微塑料的分布：以中国深圳湾为例。
Sci Total Environ. 2021 May 1;767:144695. doi: 10.1016/j.scitotenv.2020.144695. Epub 2020 Dec 30.
9
Complete Genome Sequence of sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam.从越南海防湾河岸沉积物中分离出的sp.菌株8C15b的全基因组序列。
Microbiol Resour Announc. 2022 Jul 21;11(7):e0013222. doi: 10.1128/mra.00132-22. Epub 2022 Jun 27.
10
Distribution and accumulation of mercury and copper in mangrove sediments in Shenzhen, the world's most rapid urbanized city.汞和铜在世界上城市化速度最快的城市——深圳的红树林沉积物中的分布与积累。
Environ Monit Assess. 2016 Feb;188(2):87. doi: 10.1007/s10661-016-5103-z. Epub 2016 Jan 13.
本文引用的文献
1
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.RefSeq：通过蛋白质家族模型编纂扩展原核生物基因组注释管道的覆盖范围。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
2
RefSeq: an update on prokaryotic genome annotation and curation.RefSeq：原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
3
ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences.ContEst16S：一种利用16S RNA基因序列识别受污染原核生物基因组的算法。
Int J Syst Evol Microbiol. 2017 Jun;67(6):2053-2057. doi: 10.1099/ijsem.0.001872. Epub 2017 Jun 22.
4
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
5
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.推出 EzBioCloud：一个统一分类学的 16S rRNA 基因序列和全基因组组装数据库。
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
6
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
Three decades of nanopore sequencing.纳米孔测序的三十年。
Nat Biotechnol. 2016 May 6;34(5):518-24. doi: 10.1038/nbt.3423.
8
Circlator: automated circularization of genome assemblies using long sequencing reads.Circlator：利用长测序读段实现基因组组装的自动化环化
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.
9
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
Zotero 插件