从印度尼西亚恩加诺岛红树林中分离出的新物种SHP22-7菌株的全基因组序列
Complete Genome Sequence of sp. Strain SHP22-7, a New Species Isolated from Mangrove of Enggano Island, Indonesia.
作者信息
Handayani Ira, Ratnakomala Shanti, Lisdiyanti Puspita, Kusharyoto Wien, Alanjary Mohammad, Ort-Winklbauer Regina, Kulik Andreas, Wohlleben Wolfgang, Mast Yvonne
机构信息
Department of Microbiology/Biotechnology, Interfaculty Institute of Microbiology and Infection Medicine, Faculty of Science, Eberhard Karls University of Tübingen, Tübingen, Germany.
Research Center for Biotechnology, Indonesian Institute of Sciences (LIPI), Cibinong, Indonesia.
出版信息
Microbiol Resour Announc. 2018 Nov 21;7(20). doi: 10.1128/MRA.01317-18. eCollection 2018 Nov.
Abstract
sp. SHP22-7 is a novel strain isolated from a mangrove sample on Enggano Island, Indonesia. Here, we present the 7.9-Mbp genome sequence of SHP22-7, which will provide insight into its natural compound biosynthetic potential.
摘要
菌株SHP22-7是从印度尼西亚恩加诺岛的一个红树林样本中分离出的新菌株。在此，我们展示了SHP22-7的790万碱基对基因组序列，这将有助于深入了解其天然化合物生物合成潜力。
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本文引用的文献
1
Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits.
FEMS Microbiol Ecol. 2017 Sep 1;93(9). doi: 10.1093/femsec/fix086.
2
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.
Nucleic Acids Res. 2017 Jul 3;45(W1):W36-W41. doi: 10.1093/nar/gkx319.
3
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Mash: fast genome and metagenome distance estimation using MinHash.
Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x.
5
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
6
A new species of Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) from Pulau Enggano, southwestern Sumatra, Indonesia.
Zootaxa. 2014 Jun 24;3821(4):485-95. doi: 10.11646/zootaxa.3821.4.7.
7
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
8
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
9
Characterization of the amicetin biosynthesis gene cluster from Streptomyces vinaceusdrappus NRRL 2363 implicates two alternative strategies for amide bond formation.
Appl Environ Microbiol. 2012 Apr;78(7):2393-401. doi: 10.1128/AEM.07185-11. Epub 2012 Jan 20.
10
Synthesis and uptake of the compatible solutes ectoine and 5-hydroxyectoine by Streptomyces coelicolor A3(2) in response to salt and heat stresses.
Appl Environ Microbiol. 2008 Dec;74(23):7286-96. doi: 10.1128/AEM.00768-08. Epub 2008 Oct 10.
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