Institut de Recherche pour le Développement (IRD), UMR DIADE, Université de Montpellier, Montpellier, France.
CIRAD, DIADE, Montpellier, France.
Ann Bot. 2021 Jul 30;128(2):231-240. doi: 10.1093/aob/mcab060.
The pacaya palm is a dioecious neotropical palm species that is exploited in Latin America for its male inflorescence, which is edible when immature. It is cultivated, in a non-intensive manner, in Guatemala, where a morphotype occurs that produces much larger, more highly branched inflorescences compared with wild palms. We sought to identify molecular factors underlying this phenotypic divergence, which is likely to be a product of domestication.
We performed RNA-seq-based studies on immature pacaya palm male inflorescences in order to identify genes that might be directly or indirectly affected in their expression in relation to domestication. We also measured the accumulation of a range of soluble sugar molecules to provide information on the biochemical status of the two different types of material.
A total of 408 genes were found to display significantly different expression levels between the wild and cultivated morphotypes. Three different functional categories were found to be enriched in the gene set that was upregulated in the cultivated morphotype: redox balance; secondary metabolism; and transport. Several sugars were found to accumulate at higher levels in inflorescences of the cultivated morphotype, in particular myo-inositol, fructose and glucose.
The observed upregulation of redox-related genes in the cultivated morphotype is corroborated by the observation of higher myo-inositol accumulation, which has been shown to be associated with enhanced scavenging of reactive oxygen species in other plants and which may affect meristem activity.
大穗轴榈是一种雌雄异株的新热带棕榈物种,在拉丁美洲被开发利用其未成熟时可食用的雄花序。它以非集约的方式在危地马拉种植,那里存在一种发生型,其产生的花序比野生棕榈更大、分枝更多。我们试图确定导致这种表型差异的分子因素,这可能是驯化的产物。
我们对未成熟的大穗轴榈雄花序进行了基于 RNA-seq 的研究,以鉴定可能与驯化直接或间接相关的表达受影响的基因。我们还测量了一系列可溶性糖分子的积累,以提供有关两种不同材料生化状态的信息。
总共发现 408 个基因在野生和栽培发生型之间的表达水平存在显著差异。在被上调的基因集中,发现了三个不同的功能类别富集:氧化还原平衡;次生代谢;和运输。在栽培发生型的花序中发现几种糖积累水平更高,特别是肌醇、果糖和葡萄糖。
在栽培发生型中观察到与氧化还原相关的基因上调,这与肌醇积累的增加是一致的,肌醇的积累已被证明与其他植物中活性氧的清除增强有关,这可能影响分生组织的活性。