RNA 转录本通过形成 DR 环来刺激同源重组。
RNA transcripts stimulate homologous recombination by forming DR-loops.
机构信息
Massachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA, USA.
Department of Radiation Oncology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA.
出版信息
Nature. 2021 Jun;594(7862):283-288. doi: 10.1038/s41586-021-03538-8. Epub 2021 May 12.
Homologous recombination (HR) repairs DNA double-strand breaks (DSBs) in the S and G2 phases of the cell cycle. Several HR proteins are preferentially recruited to DSBs at transcriptionally active loci, but how transcription promotes HR is poorly understood. Here we develop an assay to assess the effect of local transcription on HR. Using this assay, we find that transcription stimulates HR to a substantial extent. Tethering RNA transcripts to the vicinity of DSBs recapitulates the effects of local transcription, which suggests that transcription enhances HR through RNA transcripts. Tethered RNA transcripts stimulate HR in a sequence- and orientation-dependent manner, indicating that they function by forming DNA-RNA hybrids. In contrast to most HR proteins, RAD51-associated protein 1 (RAD51AP1) only promotes HR when local transcription is active. RAD51AP1 drives the formation of R-loops in vitro and is required for tethered RNAs to stimulate HR in cells. Notably, RAD51AP1 is necessary for the DSB-induced formation of DNA-RNA hybrids in donor DNA, linking R-loops to D-loops. In vitro, RAD51AP1-generated R-loops enhance the RAD51-mediated formation of D-loops locally and give rise to intermediates that we term 'DR-loops', which contain both DNA-DNA and DNA-RNA hybrids and favour RAD51 function. Thus, at DSBs in transcribed regions, RAD51AP1 promotes the invasion of RNA transcripts into donor DNA, and stimulates HR through the formation of DR-loops.
同源重组(HR)修复细胞周期 S 和 G2 期的 DNA 双链断裂(DSB)。几种 HR 蛋白优先募集到转录活跃的基因座的 DSB 处,但转录如何促进 HR 尚不清楚。在这里,我们开发了一种评估局部转录对 HR 影响的测定方法。使用该测定法,我们发现转录在很大程度上刺激了 HR。将 RNA 转录本固定在 DSB 附近可以再现局部转录的作用,这表明转录通过 RNA 转录本增强 HR。固定的 RNA 转录本以序列和取向依赖的方式刺激 HR,表明它们通过形成 DNA-RNA 杂交来发挥作用。与大多数 HR 蛋白不同,RAD51 相关蛋白 1(RAD51AP1)仅在局部转录活跃时才促进 HR。RAD51AP1 在体外驱动 R 环的形成,并且需要 RAD51AP1 来使固定的 RNA 转录本在细胞中刺激 HR。值得注意的是,RAD51AP1 是在供体 DNA 中诱导 DSB 形成 DNA-RNA 杂交所必需的,将 R 环与 D 环联系起来。在体外,RAD51AP1 产生的 R 环增强了 RAD51 介导的局部 D 环形成,并产生了我们称之为“DR 环”的中间产物,其包含 DNA-DNA 和 DNA-RNA 杂交体,并有利于 RAD51 功能。因此,在转录区的 DSB 处,RAD51AP1 促进 RNA 转录本侵入供体 DNA,并通过形成 DR 环刺激 HR。