• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过 NMR 光谱法对蛋白质侧链进行特性描述的方法学进展。

Methodological advancements for characterising protein side chains by NMR spectroscopy.

机构信息

Department of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, United Kingdom.

Department of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, United Kingdom.

出版信息

Curr Opin Struct Biol. 2021 Oct;70:61-69. doi: 10.1016/j.sbi.2021.04.002. Epub 2021 May 11.

DOI:10.1016/j.sbi.2021.04.002
PMID:33989947
Abstract

The surface of proteins is covered by side chains of polar amino acids that are imperative for modulating protein functionality through the formation of noncovalent intermolecular interactions. However, despite their tremendous importance, the unique structures of protein side chains require tailored approaches for investigation by nuclear magnetic resonance spectroscopy and so have traditionally been understudied compared with the protein backbone. Here, we review substantial recent methodological advancements within nuclear magnetic resonance spectroscopy to address this issue. Specifically, we consider advancements that provide new insight into methyl-bearing side chains, show the potential of using non-natural amino acids and reveal the actions of charged side chains. Combined, the new methods promise unprecedented characterisations of side chains that will further elucidate protein function.

摘要

蛋白质的表面覆盖着极性氨基酸的侧链,这些侧链对于通过形成非共价的分子间相互作用来调节蛋白质的功能至关重要。然而,尽管它们非常重要,但蛋白质侧链的独特结构需要通过核磁共振波谱学进行专门的研究,因此与蛋白质主链相比,传统上对它们的研究较少。在这里,我们回顾了核磁共振波谱学中解决这个问题的重要的最新方法学进展。具体来说,我们考虑了提供有关甲基侧链新见解的进展,展示了使用非天然氨基酸的潜力,并揭示了带电侧链的作用。总的来说,这些新方法有望对侧链进行前所未有的描述,从而进一步阐明蛋白质的功能。

相似文献

1
Methodological advancements for characterising protein side chains by NMR spectroscopy.通过 NMR 光谱法对蛋白质侧链进行特性描述的方法学进展。
Curr Opin Struct Biol. 2021 Oct;70:61-69. doi: 10.1016/j.sbi.2021.04.002. Epub 2021 May 11.
2
The role of cation-pi interactions in biomolecular association. Design of peptides favoring interactions between cationic and aromatic amino acid side chains.阳离子-π相互作用在生物分子缔合中的作用。有利于阳离子和芳香族氨基酸侧链之间相互作用的肽的设计。
J Am Chem Soc. 2001 Jul 4;123(26):6232-45. doi: 10.1021/ja010401u.
3
Characterising side chains in large proteins by protonless C-detected NMR spectroscopy.通过质子非依赖性 C 检测 NMR 光谱学对大蛋白质中的侧链进行特征描述。
Nat Commun. 2019 Apr 15;10(1):1747. doi: 10.1038/s41467-019-09743-4.
4
NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics.用于表征蛋白质碱性侧链的核磁共振方法:静电相互作用、氢键和构象动力学。
Methods Enzymol. 2019;615:285-332. doi: 10.1016/bs.mie.2018.08.017. Epub 2018 Sep 27.
5
Changes in conformational dynamics of basic side chains upon protein-DNA association.蛋白质与DNA结合时碱性侧链构象动力学的变化。
Nucleic Acids Res. 2016 Aug 19;44(14):6961-70. doi: 10.1093/nar/gkw531. Epub 2016 Jun 10.
6
Solution structure of a de novo protein from a designed combinatorial library.来自设计组合文库的全新蛋白质的溶液结构
Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13270-3. doi: 10.1073/pnas.1835644100. Epub 2003 Oct 30.
7
A simple method to measure protein side-chain mobility using NMR chemical shifts.利用 NMR 化学位移测量蛋白质侧链流动性的简单方法。
J Am Chem Soc. 2013 Oct 2;135(39):14536-9. doi: 10.1021/ja407509z. Epub 2013 Sep 23.
8
A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.一种使用未分配的NOE数据确定蛋白质侧链旋转异构体构象的贝叶斯方法。
J Comput Biol. 2011 Nov;18(11):1661-79. doi: 10.1089/cmb.2011.0172. Epub 2011 Oct 4.
9
1H NMR study of the role of heme carboxylate side chains in modulating heme pocket structure and the mechanism of reconstitution of cytochrome b5.
Biochemistry. 1991 Feb 19;30(7):1878-87. doi: 10.1021/bi00221a021.
10
Miniprotein Design: Past, Present, and Prospects.小蛋白设计:过去、现在和未来展望。
Acc Chem Res. 2017 Sep 19;50(9):2085-2092. doi: 10.1021/acs.accounts.7b00186. Epub 2017 Aug 23.

引用本文的文献

1
Continuous Validation Across Macromolecular Structure Determination Process.大分子结构测定过程中的持续验证
Nihon Kessho Gakkaishi. 2023 Feb 28;65(1):10-16. doi: 10.5940/jcrsj.65.10. Epub 2023 Mar 8.
2
Observation of Arginine Side-Chain Motions Coupled to the Global Conformational Exchange Process in Deubiquitinase A.去泛素化酶A中与全局构象交换过程耦合的精氨酸侧链运动观察
ACS Omega. 2022 Mar 8;7(11):9936-9943. doi: 10.1021/acsomega.2c00492. eCollection 2022 Mar 22.
3
Insights into the Cross Talk between Effector and Allosteric Lobes of KRAS from Methyl Conformational Dynamics.
从甲基构象动力学看 KRAS 效应结构域和变构结构域的串扰。
J Am Chem Soc. 2022 Mar 9;144(9):4196-4205. doi: 10.1021/jacs.2c00007. Epub 2022 Feb 25.
4
Large Chaperone Complexes Through the Lens of Nuclear Magnetic Resonance Spectroscopy.大伴侣复合物的核磁共振波谱学研究。
Annu Rev Biophys. 2022 May 9;51:223-246. doi: 10.1146/annurev-biophys-090921-120150. Epub 2022 Jan 19.