Institut Pasteur, Unit for Integrated Mycobacterial Pathogenomics, CNRS UMR 3525, Paris, France
Institut Pasteur, Unit for Integrated Mycobacterial Pathogenomics, CNRS UMR 3525, Paris, France.
mBio. 2021 May 18;12(3):e00965-21. doi: 10.1128/mBio.00965-21.
Current models of horizontal gene transfer (HGT) in mycobacteria are based on "distributive conjugal transfer" (DCT), an HGT type described in the fast-growing, saprophytic model organism , which creates genome mosaicism in resulting strains and depends on an ESX-1 type VII secretion system. In contrast, only few data on interstrain DNA transfer are available for tuberculosis-causing mycobacteria, for which chromosomal DNA transfer between two strains was reported, a process which, however, was not observed for strains. Here, we have studied a wide range of human- and animal-adapted members of the complex (MTBC) using an optimized filter-based mating assay together with three selected strains of that acted as DNA recipients. Unlike in previous approaches, we obtained a high yield of thousands of recombinants containing transferred chromosomal DNA fragments from various MTBC donor strains, as confirmed by whole-genome sequence analysis of 38 randomly selected clones. While the genome organizations of the obtained recombinants showed mosaicisms of donor DNA fragments randomly integrated into a recipient genome backbone, reminiscent of those described as being the result of ESX-1-mediated DCT in , we observed similar transfer efficiencies when ESX-1-deficient donor and/or recipient mutants were used, arguing that in tubercle bacilli, HGT is an ESX-1-independent process. These findings provide new insights into the genetic events driving the pathoevolution of and radically change our perception of HGT in mycobacteria, particularly for those species that show recombinogenic population structures despite the natural absence of ESX-1 secretion systems. Data on the bacterial sex-mediated impact on mycobacterial evolution are limited. Hence, our results presented here are of importance as they clearly demonstrate the capacity of a wide range of human- and animal-adapted complex (MTBC) strains to transfer chromosomal DNA to selected strains of Most interestingly, we found that interstrain DNA transfer among tubercle bacilli was not dependent on a functional ESX-1 type VII secretion system, as ESX-1 deletion mutants of potential donor and/or recipient strains yielded numbers of recombinants similar to those of their respective parental strains. These results argue that HGT in tubercle bacilli is organized in a way different from that of the most widely studied model, a finding that is also relevant beyond tubercle bacilli, given that many mycobacteria, like, for example, or , are naturally devoid of an ESX-1 secretion system but show recombinogenic, mosaic-like genomic population structures.
目前分枝杆菌水平基因转移(HGT)的模型是基于“分布式共轭转移”(DCT),这是一种在快速生长的腐生模式生物中描述的 HGT 类型,它在产生的菌株中创造了基因组镶嵌,并依赖于 ESX-1 型 VII 型分泌系统。相比之下,只有少数关于引起结核病的分枝杆菌菌株间 DNA 转移的数据,据报道,两种菌株之间的染色体 DNA 转移发生,然而,这一过程并未在菌株中观察到。在这里,我们使用优化的基于滤器的交配测定法以及三种作为 DNA 受体的选定研究了广泛的人类和动物适应的复合群(MTBC)成员。与以前的方法不同,我们从各种 MTBC 供体菌株中获得了数千个含有转移染色体 DNA 片段的重组体的高产,这通过对 38 个随机选择的克隆的全基因组序列分析得到了证实。虽然获得的重组体的基因组组织显示出供体 DNA 片段随机整合到受体基因组骨架中的镶嵌,这让人想起在中描述的作为 ESX-1 介导的 DCT 的结果,但当使用 ESX-1 缺陷型供体和/或受体突变体时,我们观察到类似的转移效率,这表明在结核分枝杆菌中,HGT 是一种不依赖于 ESX-1 的过程。这些发现为驱动结核分枝杆菌病理进化的遗传事件提供了新的见解,并从根本上改变了我们对分枝杆菌 HGT 的看法,特别是对于那些尽管自然缺乏 ESX-1 分泌系统,但显示出重组种群结构的物种。关于细菌性别的影响对分枝杆菌进化的数据是有限的。因此,我们在这里呈现的结果非常重要,因为它们清楚地表明,广泛的人类和动物适应的复合群(MTBC)菌株能够将染色体 DNA 转移到选定的菌株。最有趣的是,我们发现结核分枝杆菌菌株间的 DNA 转移不依赖于功能性 ESX-1 型 VII 型分泌系统,因为潜在供体和/或受体菌株的 ESX-1 缺失突变体产生的重组体数量与各自亲本菌株相似。这些结果表明,结核分枝杆菌中的 HGT 是以不同于最广泛研究的模型的方式组织的,这一发现对于像那样的许多分枝杆菌也很重要,因为许多分枝杆菌,例如或,自然缺乏 ESX-1 分泌系统,但表现出重组、镶嵌样的基因组种群结构。