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发现分枝杆菌凝集素作为结核病治疗的潜在药物靶点和疫苗候选物:一种理论方法。

Discovering mycobacterial lectins as potential drug targets and vaccine candidates for tuberculosis treatment: a theoretical approach.

作者信息

Sundar Shobana, Thangamani Lokesh, Piramanayagam Shanmughavel, Natarajan Jeyakumar

机构信息

Computational Biology Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu India.

Data Mining and Text Mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu India.

出版信息

J Proteins Proteom. 2021;12(2):93-104. doi: 10.1007/s42485-021-00065-y. Epub 2021 May 18.

Abstract

UNLABELLED

proliferates within the macrophages during infection and they are bounded by carbohydrates in the cell wall, called lectins. Despite their surface localization, the studies on exact functions of lectins are unexplored. Hence, in our study, using insilico approaches, 11 potential lectins of Mtb was explored as potential drug targets and vaccine candidates Initially, a gene interaction network was constructed for the 11 potential lectins and identified its functional partners. A gene ontology analysis was also performed for the 11 mycobacterial lectins along with its functional partners and found most of the proteins are present in the extracellular region of the bacterium and belongs to the PE/PPE family of proteins. Further, molecular docking studies were performed for two of the potential lectins (Rv2075c and Rv1917c). A novel series of quinoxalinone and fucoidan derivatives have been made to dock against these selected lectins. Molecular docking study reveals that quinoxalinone derivatives showed better affinity against Rv2075c, whereas fucoidan derivatives have good binding affinity against Rv1917c. Moreover, the mycobacterial lectins can interact with the host and they are considered as potential vaccine candidates. Hence, immunoinformatics study was carried out for all the 11 potential lectins. B-cell and T-cell binding epitopes were predicted using insilico tools. Further, an immunodominant epitope SIPAIPLSVEV of Rv1917c was identified, which was predicted to bind B-cell and most of the MHC alleles. Thus, the study has explored that mycobacterial lectins could be potentially used as drug targets and vaccine candidates for tuberculosis treatment.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s42485-021-00065-y.

摘要

未标记

在感染期间在巨噬细胞内增殖,并且它们被细胞壁中的碳水化合物所包围,这些碳水化合物称为凝集素。尽管它们位于表面,但关于凝集素确切功能的研究尚未开展。因此,在我们的研究中,使用计算机模拟方法,探索了结核分枝杆菌的11种潜在凝集素作为潜在的药物靶点和疫苗候选物。首先,构建了这11种潜在凝集素的基因相互作用网络,并确定了其功能伙伴。还对这11种分枝杆菌凝集素及其功能伙伴进行了基因本体分析,发现大多数蛋白质存在于细菌的细胞外区域,并且属于PE/PPE蛋白家族。此外,对其中两种潜在凝集素(Rv2075c和Rv1917c)进行了分子对接研究。制备了一系列新型喹喔啉酮和岩藻依聚糖衍生物与这些选定的凝集素进行对接。分子对接研究表明,喹喔啉酮衍生物对Rv2075c表现出更好的亲和力,而岩藻依聚糖衍生物对Rv1917c具有良好的结合亲和力。此外,分枝杆菌凝集素可以与宿主相互作用,它们被认为是潜在的疫苗候选物。因此,对所有11种潜在凝集素进行了免疫信息学研究。使用计算机模拟工具预测了B细胞和T细胞结合表位。此外,鉴定出Rv|917c的一个免疫显性表位SIPAIPLSVEV,预计它能与B细胞和大多数MHC等位基因结合。因此,该研究探索了分枝杆菌凝集素可能作为结核病治疗的药物靶点和疫苗候选物。

补充信息

在线版本包含可在10.1007/s42485-021-00065-y获取的补充材料。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14b3/8129965/6a5414758462/42485_2021_65_Fig1_HTML.jpg

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