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寡核苷酸定向突变构建:一种体外无酶反应的缺口双链DNA方法。

Oligonucleotide-directed construction of mutations: a gapped duplex DNA procedure without enzymatic reactions in vitro.

作者信息

Fritz H J, Hohlmaier J, Kramer W, Ohmayer A, Wippler J

机构信息

Max-Planck-Institut für Biochemie, Abteilung Zellbiologie, Martinsried bei München, FRG.

出版信息

Nucleic Acids Res. 1988 Jul 25;16(14B):6987-99. doi: 10.1093/nar/16.14.6987.

DOI:10.1093/nar/16.14.6987
PMID:3405755
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC338346/
Abstract

The gapped duplex DNA approach to oligonucleotide-directed construction of mutations (Kramer et al. 1984, Nucl. Acids Res. 12, 9441-9456) has been developed further. A procedure is described that makes in vitro DNA polymerase/DNA ligase reactions dispensable. Direct transfection of host bacteria with gdDNA molecules of recombinant phage M13 plus mutagenic oligonucleotide results in marker yields in excess of 50% (gap size 1640 nucleotides). An important feature incorporated into the mutagenic oligonucleotide is the presence of one or two internucleotidic phosphorothioate linkages immediately adjacent to the 5'-terminus. Automated preparation and biochemical properties of such compounds are described as well as their performance in oligonucleotide-directed mutagenesis. A systematic study of the following parameters influencing marker yield is reported: Gap size, length of oligonucleotide, chemical nature of oligonucleotide termini and heatshock temperature during transformation.

摘要

用于寡核苷酸定向构建突变的缺口双链DNA方法(Kramer等人,1984年,《核酸研究》12卷,9441 - 9456页)已得到进一步发展。本文描述了一种无需体外DNA聚合酶/DNA连接酶反应的方法。用重组噬菌体M13的gdDNA分子加上诱变寡核苷酸直接转染宿主细菌,可使标记产量超过50%(缺口大小为1640个核苷酸)。诱变寡核苷酸中纳入的一个重要特征是在紧邻5'端的位置存在一个或两个核苷酸间硫代磷酸酯键。本文描述了此类化合物的自动化制备、生化特性及其在寡核苷酸定向诱变中的性能。报告了对影响标记产量的以下参数的系统研究:缺口大小、寡核苷酸长度、寡核苷酸末端的化学性质以及转化过程中的热休克温度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/becd/338346/3fd2eb78f3b8/nar00168-0304-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/becd/338346/3fd2eb78f3b8/nar00168-0304-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/becd/338346/3fd2eb78f3b8/nar00168-0304-a.jpg

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Oligonucleotide-directed construction of mutations: a gapped duplex DNA procedure without enzymatic reactions in vitro.寡核苷酸定向突变构建:一种体外无酶反应的缺口双链DNA方法。
Nucleic Acids Res. 1988 Jul 25;16(14B):6987-99. doi: 10.1093/nar/16.14.6987.
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The gapped duplex DNA approach to oligonucleotide-directed mutation construction.用于寡核苷酸定向突变构建的缺口双链DNA方法。
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Efficient oligonucleotide-directed construction of mutations in expression vectors by the gapped duplex DNA method using alternating selectable markers.利用交替选择标记,通过缺口双链DNA法在表达载体中高效地进行寡核苷酸定向突变构建。
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Improved enzymatic in vitro reactions in the gapped duplex DNA approach to oligonucleotide-directed construction of mutations.在缺口双链DNA方法中用于寡核苷酸定向构建突变的体外酶促反应得到改进。
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本文引用的文献

1
Construction of viable and lethal mutations in the origin of bacteriophage 'phi' X174 using synthetic oligodeoxyribonucleotides.利用合成寡脱氧核糖核苷酸构建噬菌体“φ”X174起源处的可行和致死突变。
J Mol Biol. 1981 Nov 15;152(4):615-39. doi: 10.1016/0022-2836(81)90120-0.
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Different base/base mismatches are corrected with different efficiencies by the methyl-directed DNA mismatch-repair system of E. coli.大肠杆菌的甲基化导向DNA错配修复系统对不同的碱基/碱基错配进行校正的效率不同。
Cell. 1984 Oct;38(3):879-87. doi: 10.1016/0092-8674(84)90283-6.
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New M13 vectors for cloning.
Nucleic Acids Res. 1989 Jul 25;17(14):5862. doi: 10.1093/nar/17.14.5862.
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Efficient oligonucleotide-directed construction of mutations in expression vectors by the gapped duplex DNA method using alternating selectable markers.利用交替选择标记,通过缺口双链DNA法在表达载体中高效地进行寡核苷酸定向突变构建。
Nucleic Acids Res. 1989 Jun 26;17(12):4441-54. doi: 10.1093/nar/17.12.4441.
5
AUG codons in the RNA leader sequences of the yeast PET genes CBS1 and SCO1 have no influence on translation efficiency.酵母PET基因CBS1和SCO1的RNA前导序列中的AUG密码子对翻译效率没有影响。
Curr Genet. 1991 Dec;20(6):465-9. doi: 10.1007/BF00334773.
用于克隆的新型M13载体。
Methods Enzymol. 1983;101:20-78. doi: 10.1016/0076-6879(83)01005-8.
4
Synthesis and configurational analysis of a dinucleoside phosphate isotopically chiral at phosphorus. Stereochemical course of Penicillium citrum nuclease P1 reaction.磷原子具有同位素手性的磷酸二核苷的合成与构型分析。柠檬青霉核酸酶P1反应的立体化学过程。
Biochemistry. 1983 Mar 15;22(6):1369-77. doi: 10.1021/bi00275a008.
5
Directed mutagenesis of DNA cloned in filamentous phage: influence of hemimethylated GATC sites on marker recovery from restriction fragments.丝状噬菌体中克隆的DNA的定向诱变:半甲基化GATC位点对从限制性片段中回收标记的影响。
Nucleic Acids Res. 1982 Oct 25;10(20):6475-85. doi: 10.1093/nar/10.20.6475.
6
An enzyme activity from Escherichia coli that attacks single-stranded deoxyribopolymers and single-stranded deoxyribonucleic acid containing apyrimidinic sites.
Biochemistry. 1982 May 11;21(10):2548-56. doi: 10.1021/bi00539a039.
7
A system for shotgun DNA sequencing.一种用于鸟枪法DNA测序的系统。
Nucleic Acids Res. 1981 Jan 24;9(2):309-21. doi: 10.1093/nar/9.2.309.
8
Fidelity of DNA replication under conditions used for oligodeoxynucleotide-directed mutagenesis.
J Mol Biol. 1984 Aug 5;177(2):269-78. doi: 10.1016/0022-2836(84)90456-x.
9
On the fidelity of DNA replication. The accuracy of T4 DNA polymerases in copying phi X174 DNA in vitro.关于DNA复制的保真度。T4 DNA聚合酶在体外复制φX174 DNA的准确性。
J Biol Chem. 1984 Feb 10;259(3):1539-45.
10
The gapped duplex DNA approach to oligonucleotide-directed mutation construction.用于寡核苷酸定向突变构建的缺口双链DNA方法。
Nucleic Acids Res. 1984 Dec 21;12(24):9441-56. doi: 10.1093/nar/12.24.9441.