Institute of Biochemistry and Genetics - Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IBG UFRC RAS), Pr. Oktybry 71, Ufa, 450054, Russian Federation.
Department of Biology, Bashkir State Medical University, Lenina Str, 3, Ufa, 450008, Russian Federation.
Biochem Genet. 2022 Feb;60(1):54-79. doi: 10.1007/s10528-021-10087-2. Epub 2021 Jun 6.
Chronic obstructive pulmonary disease (COPD) is a chronic inflammatory lung disease affecting primarily distal respiratory pathways and lung parenchyma. This study aimed to determine possible genetic association of chemokine and chemokine receptor genes polymorphisms with COPD in a Tatar population from Russia. SNPs of CCL20, CCR6, CXCL8, CXCR1, CXCR2, CCL8, CCL23, CCR2, and CX3CL1 genes and their gene-gene interactions were analyzed for association with COPD in cohort of 601 patients and 617 controls. As a result statistically significant associations with COPD in the study group under the biologically plausible assumption of additive genetic model were identified in CCL20 (rs6749704) (P = 0.00001, OR 1.55), CCR6 (rs3093024) (P = 0.0003, OR 0.74), CCL8 (rs3138035) (P = 0.0001, OR 0.67), CX3CL1 (rs170364) (P = 0.023, OR 1.21), CXCL8 (rs4073) (P = 0.007, OR 1.23), CXCR2 (rs2230054) (P = 0.0002, OR 1.32). Following SNPs CCL20 (rs6749704), CX3CL1 (rs170364), CCL8 (rs3138035), CXCL8 (rs4073), CXCR2 (rs2230054) showed statistically significant association with COPD only in smokers. The association of CCR6 (rs3093024) with COPD was confirmed both in smokers and in non-smokers. A relationship between smoking index and CCL20 (rs6749704) (P = 0.04), CCR6 (rs3093024) (P = 0.007), CCL8 (rs3138035) (P = 0.0043), and CX3CL1 (rs170364) (P = 0.04) was revealed. A significant genotype-dependent variation of Forced Vital Capacity was observed for CCL23 (rs854655) (P = 0.04). Forced Expiratory Volume in 1 s / Forced Vital Capacity ratio was affected by CCL23 (rs854655) (P = 0.05) and CXCR2 (rs1126579) (P = 0.02). Using the APSampler algorithm, we obtained nine gene-gene combinations that remained significantly associated with COPD; loci CCR2 (rs1799864) and CCL8 (rs3138035) were involved in the largest number of the combinations. Our results indicate that CCL20 (rs6749704), CCR6 (rs3093024), CCR2 (rs1799864), CCL8 (rs3138035), CXCL8 (rs4073), CXCR1 (rs2234671), CXCR2 (rs2230054), and CX3CL1 (rs170364) polymorphisms are strongly associated with COPD in Tatar population from Russia, alone and in combinations. For the first time combination of the corresponding SNPs were considered and as a result 8 SNP patterns were associated with increased risk of COPD.
慢性阻塞性肺疾病(COPD)是一种影响主要是远端呼吸道和肺实质的慢性炎症性肺部疾病。本研究旨在确定趋化因子和趋化因子受体基因多态性与俄罗斯鞑靼人群 COPD 之间的可能遗传关联。对来自 601 名患者和 617 名对照的 CCL20、CCR6、CXCL8、CXCR1、CXCR2、CCL8、CCL23、CCR2 和 CX3CL1 基因的 SNP 及其基因-基因相互作用进行了分析,以确定与 COPD 的关联。在具有合理生物学假设的加性遗传模型下,在研究组中发现了与 COPD 具有统计学显著关联的 CCL20(rs6749704)(P=0.00001,OR 1.55)、CCR6(rs3093024)(P=0.0003,OR 0.74)、CCL8(rs3138035)(P=0.0001,OR 0.67)、CX3CL1(rs170364)(P=0.023,OR 1.21)、CXCL8(rs4073)(P=0.007,OR 1.23)、CXCR2(rs2230054)(P=0.0002,OR 1.32)的 SNP。在吸烟人群中,CCL20(rs6749704)、CX3CL1(rs170364)、CCL8(rs3138035)、CXCL8(rs4073)、CXCR2(rs2230054)这 5 个 SNP 与 COPD 仅有统计学显著关联。CCR6(rs3093024)与 COPD 的关联在吸烟者和非吸烟者中均得到证实。CCL20(rs6749704)、CCR6(rs3093024)、CCL8(rs3138035)和 CX3CL1(rs170364)与吸烟指数之间存在关联(P=0.04、P=0.007、P=0.0043 和 P=0.04)。CCL23(rs854655)的基因型依赖性差异对用力肺活量有显著影响(P=0.04)。用力呼气量与用力肺活量的比值受 CCL23(rs854655)(P=0.05)和 CXCR2(rs1126579)(P=0.02)的影响。使用 APSampler 算法,我们获得了 9 个与 COPD 仍然显著相关的基因-基因组合;CCR2(rs1799864)和 CCL8(rs3138035)这两个基因座涉及的组合数量最多。我们的研究结果表明,CCL20(rs6749704)、CCR6(rs3093024)、CCR2(rs1799864)、CCL8(rs3138035)、CXCL8(rs4073)、CXCR1(rs2234671)、CXCR2(rs2230054)和 CX3CL1(rs170364)多态性与俄罗斯鞑靼人群的 COPD 强烈相关,单独存在或组合存在。这是首次考虑相应的 SNP 组合,结果有 8 个 SNP 模式与 COPD 风险增加相关。