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转移性结直肠癌肿瘤组织与游离DNA中10个常见突变基因的突变模式高度一致。

High concordance of mutation patterns in 10 common mutated genes between tumor tissue and cell-free DNA in metastatic colorectal cancer.

作者信息

Lan Yuan-Tzu, Chang Shih-Ching, Lin Pei-Ching, Lin Chien-Hsing, Liang Wen-Yi, Chen Wei-Shone, Jiang Jeng-Kai, Yang Shung-Haur, Lin Jen-Kou

机构信息

Division of Colon & Rectal Surgery, Department of Surgery, Taipei Veterans General Hospital Taipei, Taiwan.

Department of Surgery, Faculty of Medicine, School of Medicine, National Yang Ming Chiao Tung University Taipei, Taiwan.

出版信息

Am J Cancer Res. 2021 May 15;11(5):2228-2237. eCollection 2021.

Abstract

The concordance of mutation patterns between cell-free DNA (cfDNA) and tumor DNA varies in colorectal cancers (CRCs). Next-generation sequencing (NGS) by targeted sequencing can detect novel genes. We aimed to use NGS to test the concordance between cfDNA and tumor DNA in metastatic CRCs. A total of 95 paired tumor and peripheral blood samples from metastatic CRC patients were included. The tumor DNA and cfDNA were analyzed with a 10-gene NGS panel (Illumina HiSeq2500 system). The median number of mutations in tumor samples was 3 (range 0-7). The most commonly mutated gene was (63.2%), followed by (49.5%), (35.8%) and (15.8%). The concordance of mutation patterns in these 10 genes was as high as 91% between cfDNA and tumor samples in these metastatic CRC patients. A sensitivity of 88.2% and specificity of 100% was found when using mutation status of cfDNA to predict mutation in tumor tissue. For tumor DNA with , , or mutations, right-sided CRCs were more likely to develop peritoneal metastases, while for tumor DNA with mutations, left-sided tumors were more likely to have lung metastases. For cfDNA with or mutations, right-sided CRCs were more likely to have peritoneal metastases. Due to the high concordance of mutation patterns between cfDNA and tumor samples, monitoring the mutation pattern of cfDNA may be applicable in the treatment of metastatic CRC.

摘要

在结直肠癌(CRC)中,游离DNA(cfDNA)与肿瘤DNA之间的突变模式一致性存在差异。通过靶向测序的新一代测序(NGS)可以检测新基因。我们旨在使用NGS来测试转移性CRC中cfDNA与肿瘤DNA之间的一致性。纳入了95例转移性CRC患者的配对肿瘤和外周血样本。使用10基因NGS检测板(Illumina HiSeq2500系统)分析肿瘤DNA和cfDNA。肿瘤样本中的突变中位数为3(范围0 - 7)。最常发生突变的基因是 (63.2%),其次是 (49.5%)、 (35.8%)和 (15.8%)。在这些转移性CRC患者中,这10个基因的突变模式在cfDNA与肿瘤样本之间的一致性高达91%。当使用cfDNA的 突变状态来预测肿瘤组织中的 突变时,敏感性为88.2%,特异性为100%。对于具有 、 或 突变的肿瘤DNA,右侧CRC更易发生腹膜转移,而对于具有 突变的肿瘤DNA,左侧肿瘤更易发生肺转移。对于具有 或 突变的cfDNA,右侧CRC更易发生腹膜转移。由于cfDNA与肿瘤样本之间的突变模式一致性较高,监测cfDNA的突变模式可能适用于转移性CRC的治疗。

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