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基于质谱的单克隆抗体的测序使用多种蛋白酶和双重断裂方案。

Mass Spectrometry-Based Sequencing of Monoclonal Antibodies Using Multiple Proteases and a Dual Fragmentation Scheme.

机构信息

Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.

出版信息

J Proteome Res. 2021 Jul 2;20(7):3559-3566. doi: 10.1021/acs.jproteome.1c00169. Epub 2021 Jun 14.

Abstract

Antibody sequence information is crucial to understanding the structural basis for antigen binding and enables the use of antibodies as therapeutics and research tools. Here, we demonstrate a method for direct sequencing of monoclonal IgG from the purified antibody products. The method uses a panel of multiple complementary proteases to generate suitable peptides for sequencing by liquid chromatography-tandem mass spectrometry (LC-MS/MS) in a bottom-up fashion. Furthermore, we apply a dual fragmentation scheme, using both stepped high-energy collision dissociation (stepped HCD) and electron-transfer high-energy collision dissociation (EThcD), on all peptide precursors. The method achieves full sequence coverage of the monoclonal antibody herceptin, with an accuracy of 99% in the variable regions. We applied the method to sequence the widely used anti-FLAG-M2 mouse monoclonal antibody, which we successfully validated by remodeling a high-resolution crystal structure of the Fab and demonstrating binding to a FLAG-tagged target protein in Western blot analysis. The method thus offers robust and reliable sequences of monoclonal antibodies.

摘要

抗体序列信息对于理解抗原结合的结构基础至关重要,并使抗体能够作为治疗剂和研究工具得到应用。在这里,我们展示了一种从纯化的抗体产品中直接对单克隆 IgG 进行测序的方法。该方法使用一组多种互补蛋白酶以液相色谱-串联质谱(LC-MS/MS)的方式从下到上生成适合测序的肽段。此外,我们对所有肽前体都应用了双重碎裂方案,既使用分步高能碰撞解离(stepped HCD),也使用电子转移高能碰撞解离(EThcD)。该方法实现了对曲妥珠单抗(herceptin)单克隆抗体的完整序列覆盖,可变区的准确率为 99%。我们将该方法应用于广泛使用的抗-FLAG-M2 小鼠单克隆抗体的测序,我们通过对 Fab 的高分辨率晶体结构进行重塑并在 Western blot 分析中证明其与 FLAG 标记的靶蛋白结合来成功验证了该方法。因此,该方法提供了可靠的单克隆抗体序列。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/434c/8256418/9d84a93ce034/pr1c00169_0002.jpg

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