Liu Huaifeng, Gao Yu, Hu Shangshang, Fan Zhengran, Wang Xianggang, Li Shujing
School of Life Sciences, Bengbu Medical College, Bengbu, China.
Anhui Province Key Laboratory of Immunology in Chronic Diseases, Bengbu Medical College, Bengbu, China.
Front Genet. 2021 Jun 3;12:680528. doi: 10.3389/fgene.2021.680528. eCollection 2021.
Liver Hepatocellular Carcinoma (LIHC), a malignant tumor with high incidence and mortality, is one of the most common cancers in the world. Multiple studies have found that the aberrant expression of rhythm genes is closely related to the occurrence of LIHC. This study aimed to use bioinformatics analysis to identify differentially expressed rhythm genes (DERGs) in LIHC. A total of 563 DERGs were found in LIHC, including 265 downregulated genes and 298 upregulated genes. KEGG pathway enrichment and GO analyses showed that DERGs were significantly enriched in rhythmic and metabolic processes. Survival analysis revealed that high expression levels of , , and S2 were significantly associated with the low survival rate in LIHC patients. Through cell experiment verification, the mRNA expression levels of , , and were found to be strongly upregulated, which was consistent with the bioinformatics analysis of LIHC patient samples. A total of 23 nodes and 135 edges were involved in the protein-protein interaction network of , , and genes. Clinical correlation analyses revealed that , , and expression levels were high-risk factors and independently connected with the overall survival rate in LIHC patients. In conclusion, the identification of these DERGs contributes to the exploration of the molecular mechanisms of LIHC occurrence and development and may be used as diagnostic and prognostic biomarkers and molecular targets for chronotherapy in LIHC patients in the future.
肝细胞肝癌(LIHC)是一种发病率和死亡率都很高的恶性肿瘤,是世界上最常见的癌症之一。多项研究发现,节律基因的异常表达与LIHC的发生密切相关。本研究旨在利用生物信息学分析来鉴定LIHC中差异表达的节律基因(DERGs)。在LIHC中总共发现了563个DERGs,包括265个下调基因和298个上调基因。KEGG通路富集分析和基因本体(GO)分析表明,DERGs在节律和代谢过程中显著富集。生存分析显示,[此处原文缺失具体基因名称]、[此处原文缺失具体基因名称]和S2的高表达水平与LIHC患者的低生存率显著相关。通过细胞实验验证,发现[此处原文缺失具体基因名称]、[此处原文缺失具体基因名称]和[此处原文缺失具体基因名称]的mRNA表达水平强烈上调,这与LIHC患者样本的生物信息学分析结果一致。[此处原文缺失具体基因名称]、[此处原文缺失具体基因名称]和[此处原文缺失具体基因名称]基因的蛋白质-蛋白质相互作用网络共涉及23个节点和135条边。临床相关性分析显示,[此处原文缺失具体基因名称]、[此处原文缺失具体基因名称]和[此处原文缺失具体基因名称]的表达水平是高危因素,并且与LIHC患者的总生存率独立相关。总之,这些DERGs的鉴定有助于探索LIHC发生和发展的分子机制,并且未来可能用作LIHC患者的诊断和预后生物标志物以及时辰治疗的分子靶点。