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微型化和物联网化的基于连续流的微流控 PCR 装置,用于 DNA 扩增。

Miniaturized and IoT Enabled Continuous-Flow-Based Microfluidic PCR Device for DNA Amplification.

出版信息

IEEE Trans Nanobioscience. 2022 Jan;21(1):97-104. doi: 10.1109/TNB.2021.3092292. Epub 2021 Dec 30.

Abstract

Herein, a continuous-flow driven microfluidic device has been designed and fabricated using the CO laser ablation method for polymerase chain reaction (PCR). The device consists of a polymethyl methacrylate (PMMA) microfluidic channel with 30 serpentine thermal cycles, an arduino board, two custom-made cartridge heaters, and thermocouple sensors. The portable thermal management system, with aluminium blocks placed on a wooden substrate, working on the PID controller principle, is low-cost, battery-powered, automated, integrated, and IoT-enabled. The device with dimensions 80×72×36 mm (L × W × H) has a temperature accuracy of ±0.2 °C. The IoT module enables accessing and storage of real-time temperature values directly onto the smartphone through ThingSpeak analytics. It was developed to achieve desirable accurate temperature at two thermal zones, denaturation and annealing (95 °C and 60 °C) on the microfluidic thermal management platform. A PCR mixture of [Formula: see text] was infused into the serpentine-based microchannel using a syringe pump. Amplification of DNA template with 594-base pair (bp) fragment of the rat GAPDH gene was successfully performed on the miniaturized thermal management system. The total time required for a complete PCR reaction was 32 min at an optimum flow rate of [Formula: see text]/min. The amplified sample of the target DNA obtained from the PCR microchannel was then separated by agarose gel electrophoresis and was further analyzed using a gel-doc system. Finally, the obtained results were compared to the conventional PCR instrument showing excellent performance.

摘要

本文设计并制作了一种基于连续流的微流控装置,用于聚合酶链反应(PCR)。该装置由聚甲基丙烯酸甲酯(PMMA)微流道和 30 个蛇形热循环组成,使用 CO 激光烧蚀法制作,配有 Arduino 板、两个定制的盒式加热器和热电偶传感器。该便携式热管理系统采用 PID 控制器原理,由放置在木质基板上的铝块组成,成本低、电池供电、自动化、集成化和物联网化。该装置尺寸为 80×72×36mm(L×W×H),温度精度为±0.2°C。物联网模块通过 ThingSpeak 分析实现了对智能手机的实时温度值的访问和存储。该装置旨在实现两个热区(变性和退火区,温度分别为 95°C 和 60°C)的理想精确温度,并在微流控热管理平台上完成。使用注射器泵将 [Formula: see text] 的 PCR 混合物注入基于蛇形的微通道中。在小型化热管理系统上成功地对大鼠 GAPDH 基因 594 碱基对(bp)片段的 DNA 模板进行了扩增。在最佳流速为 [Formula: see text]/min 时,整个 PCR 反应所需的总时间为 32 分钟。然后通过琼脂糖凝胶电泳对从 PCR 微通道获得的目标 DNA 扩增样本进行分离,并进一步使用凝胶文档系统进行分析。最后,将获得的结果与传统的 PCR 仪器进行比较,显示出优异的性能。

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