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基于一般人群数据库的常染色体隐性先天性甲状腺功能减退症全球携带者频率分析及预测遗传患病率。

Analysis of Worldwide Carrier Frequency and Predicted Genetic Prevalence of Autosomal Recessive Congenital Hypothyroidism Based on a General Population Database.

机构信息

Department of Laboratory Medicine, Kyung Hee University School of Medicine and Kyung Hee University Medical Center, Seoul 02447, Korea.

出版信息

Genes (Basel). 2021 Jun 4;12(6):863. doi: 10.3390/genes12060863.

Abstract

To assess how genomic information of the general population reflects probabilities of developing diseases and the differences in those probabilities among ethnic groups, a general population database was analyzed with an example of congenital hypothyroidism. Twelve candidate genes that follow an autosomal recessive inheritance pattern in congenital hypothyroidism (, , , , , , , , , ) in the gnomAD database (v2.1.1) were analyzed. The carrier frequency (CF) and predicted genetic prevalence (pGP) were estimated. The total CF in the overall population was 3.6%. showed the highest CF (1.8%), followed by (0.46%), (0.44%), (0.31%), (0.144%), (0.141%), (0.08%), (0.06%), (0.059%), (0.059%), (0.04%), and (0%). The pGP in the overall population was 10.01 individuals per 100,000 births (1:9992). The highest pGP was in the East Asian population at 52.48 per 100,000 births (1:1905), followed by Finnish (35.96), Non-Finnish European (9.56), African/African American (4.0), Latino/Admixed American (3.89), South Asian (3.56), and Ashkenazi Jewish (1.81) groups. Comparing the pGP with the real incidence of congenital hypothyroidism, the pGP in East Asian populations was highly consistent with the real incidence.

摘要

为了评估一般人群的基因组信息如何反映发病概率以及不同族群之间这些概率的差异,我们以先天性甲状腺功能减退症为例,分析了一般人群数据库。在 gnomAD 数据库(v2.1.1)中,分析了遵循常染色体隐性遗传模式的 12 个先天性甲状腺功能减退症的候选基因(、、、、、、、、、)。估计了携带者频率(CF)和预测遗传患病率(pGP)。总体人群的总 CF 为 3.6%。显示出最高的 CF(1.8%),其次是(0.46%)、(0.44%)、(0.31%)、(0.144%)、(0.141%)、(0.08%)、(0.06%)、(0.059%)、(0.059%)、(0.04%)和(0%)。总体人群的 pGP 为每 10 万例出生 10.01 例(1:9992)。最高的 pGP 出现在东亚人群中,为每 10 万例出生 52.48 例(1:1905),其次是芬兰人(35.96)、非芬兰裔欧洲人(9.56)、非洲/非裔美国人(4.0)、拉丁裔/混合裔美国人(3.89)、南亚人(3.56)和阿什肯纳兹犹太人(1.81)。将 pGP 与先天性甲状腺功能减退症的实际发病率进行比较,东亚人群的 pGP 与实际发病率高度一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79d6/8228807/d8f40af456e7/genes-12-00863-g001.jpg

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