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不同温度下手性 BeB 团簇的结构、振动圆二色性和红外光谱的理论预测。

Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral BeB Cluster at Different Temperatures.

机构信息

Departamento de Investigación en Polímeros y Materiales, Edificio 3G, Universidad de Sonora, Hermosillo 83000, Sonora, Mexico.

Organización Científica y Tecnológica del Desierto, Hermosillo 83150, Sonora, Mexico.

出版信息

Molecules. 2021 Jun 28;26(13):3953. doi: 10.3390/molecules26133953.

DOI:10.3390/molecules26133953
PMID:34203563
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8271876/
Abstract

Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglected, even though functional materials work at finite temperatures. In the present study, the probability of the occurrence of one particular BeB isomer at temperature T is estimated by employing Gibbs free energy computed within the framework of quantum statistical mechanics and nanothermodynamics. To identify a list of all possible low-energy chiral and achiral structures, an exhaustive and efficient exploration of the potential/free energy surfaces is carried out using a multi-level multistep global genetic algorithm search coupled with DFT. In addition, we discuss the energetic ordering of structures computed at the DFT level against single-point energy calculations at the CCSD(T) level of theory. The total VCD/IR spectra as a function of temperature are computed using each isomer's probability of occurrence in a Boltzmann-weighted superposition of each isomer's spectrum. Additionally, we present chemical bonding analysis using the adaptive natural density partitioning method in the chiral putative global minimum. The transition state structures and the enantiomer-enantiomer and enantiomer-achiral activation energies as a function of temperature evidence that a change from an endergonic to an exergonic type of reaction occurs at a temperature of 739 K.

摘要

最低能量结构、异构体的分布及其分子性质在很大程度上取决于几何形状和温度。使用 DFT 方法学进行总能量计算通常在零 K 温度下进行;因此,尽管功能材料在有限温度下工作,但总能量的熵贡献被忽略了。在本研究中,通过在量子统计力学和纳米热力学框架内计算吉布斯自由能,估算了在温度 T 下特定 BeB 异构体出现的概率。为了确定所有可能的低能手性和非手性结构的列表,使用多水平多步全局遗传算法搜索与 DFT 相结合,对潜在/自由能表面进行了详尽而有效的探索。此外,我们还讨论了在 DFT 水平上计算的结构的能量排序,以及在 CCSD(T)理论水平上的单点能量计算。通过在每个异构体的光谱的玻尔兹曼加权叠加中使用每个异构体的出现概率,计算了作为温度函数的总 VCD/IR 光谱。此外,我们使用自适应自然密度分区方法在手性假定全局最小值中进行了化学成键分析。过渡态结构以及对映体-对映体和对映体-非对映体的活化能随温度的变化表明,在 739 K 的温度下,反应从吸能型转变为放能型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/20b6a43f7aa0/molecules-26-03953-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/543a85f4202f/molecules-26-03953-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/bc94404a73c8/molecules-26-03953-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/2a3f5413f0f3/molecules-26-03953-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/2d7f66bf1c9f/molecules-26-03953-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/51b5d3abe780/molecules-26-03953-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/20b6a43f7aa0/molecules-26-03953-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/543a85f4202f/molecules-26-03953-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/bc94404a73c8/molecules-26-03953-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/2a3f5413f0f3/molecules-26-03953-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/2d7f66bf1c9f/molecules-26-03953-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/51b5d3abe780/molecules-26-03953-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca5d/8271876/20b6a43f7aa0/molecules-26-03953-g008.jpg

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