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源自三个生物地理区域的啮齿类鞭虫(属)的有丝分裂基因组学与进化史

Mitogenomics and Evolutionary History of Rodent Whipworms ( spp.) Originating from Three Biogeographic Regions.

作者信息

Petružela Jan, Ribas Alexis, de Bellocq Joëlle Goüy

机构信息

Institute of Vertebrate Biology, Czech Academy of Sciences, Květná 8, 603 65 Brno, Czech Republic.

Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 602 00 Brno, Czech Republic.

出版信息

Life (Basel). 2021 Jun 9;11(6):540. doi: 10.3390/life11060540.

Abstract

spp. is a widespread nematode which parasitizes a wide range of mammalian hosts including rodents, the most diverse mammalian order. However, genetic data on rodent whipworms are still scarce, with only one published whole genome () despite an increasing demand for whole genome data. We sequenced the whipworm mitogenomes from seven rodent hosts belonging to three biogeographic regions (Palearctic, Afrotropical, and Indomalayan), including three previously described species: , and . We assembled and annotated two complete and five almost complete mitogenomes (lacking only the long non-coding region) and performed comparative genomic and phylogenetic analyses. All the mitogenomes are circular, have the same organisation, and consist of 13 protein-coding, 2 rRNA, and 22 tRNA genes. The phylogenetic analysis supports geographical clustering of whipworm species and indicates that   found in Eastern Africa is able to infect multiple closely related rodent hosts. Our results are informative for species delimitation based on mitochondrial markers and could be further used in studies on phylogeny, phylogeography, and population genetics of rodent whipworms.

摘要

鞭虫属是一种广泛分布的线虫,寄生于包括啮齿动物在内的多种哺乳动物宿主,啮齿动物是哺乳动物中种类最多样化的目。然而,尽管对全基因组数据的需求不断增加,但关于啮齿动物鞭虫的遗传数据仍然稀缺,仅有一个已发表的全基因组()。我们对来自三个生物地理区域(古北区、 Afrotropical和东洋区)的七种啮齿动物宿主的鞭虫线粒体基因组进行了测序,包括三个先前描述的物种: 、 和 。我们组装并注释了两个完整和五个几乎完整的线粒体基因组(仅缺少长非编码区),并进行了比较基因组和系统发育分析。所有线粒体基因组都是环状的,具有相同的组织,由13个蛋白质编码基因、2个rRNA基因和22个tRNA基因组成。系统发育分析支持鞭虫物种的地理聚类,并表明在东非发现的 能够感染多种密切相关的啮齿动物宿主。我们的结果对于基于线粒体标记的物种界定具有参考价值,并可进一步用于啮齿动物鞭虫的系统发育、系统地理学和种群遗传学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80f3/8228637/4c7c6128d75e/life-11-00540-g001.jpg

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