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iTRAQ 定量蛋白质组学表明,在昆虫载体褐飞虱获得水稻黑条矮缩病毒后,存在线粒体自噬作用。

iTRAQ-based quantitative proteomics suggests mitophagy involvement after Rice black-streaked dwarf virus acquisition in insect vector small brown planthopper Laodelphax striatellus Fallén.

机构信息

Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu 210014, People's Republic of China; Department of Biological Sciences, National University of Singapore, Singapore 119543, Singapore; National University of Singapore Research Institute, Suzhou, Jiangsu 215123, People's Republic of China.

Department of Biological Sciences, National University of Singapore, Singapore 119543, Singapore.

出版信息

J Proteomics. 2021 Aug 30;246:104314. doi: 10.1016/j.jprot.2021.104314. Epub 2021 Jun 30.

Abstract

Plant viruses trigger numerous responses in their insect vectors. Using iTRAQ-based quantitative proteomics analysis, early responses of the insect vector, the small brown planthopper (Laodelphax striatellus Fallén, SBPH), after acquiring Rice black-streaked dwarf virus (RBSDV) at 3 days and 5 days post first access to diseased plants (padp) were revealed. A total of 582 differentially abundant proteins (DAPs) in SBPH with a fold change >1.500 or <0.667 (p-value < 0.05) were identified. The proteomic analysis in SBPH at 3 days padp revealed 106 highly abundant proteins and 193 of low abundance, while 5 days padp revealed 214 highly abundant proteins and 182 of low abundance. Among them, 51 highly abundant proteins and 42 of low abundance were shown consistently at both 3 days and 5 days padp. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis mapping and Gene Ontology (GO) term classification suggested impairment of mitochondria in SBPH after RBSDV acquisition, and the 77 out of 582 differentially abundant SBPH proteins analyzed by the STRING program revealed the interaction network of the mitochondrial DAPs, showing an overall down-regulation of mitochondrial proteins including the electron transport chain proteins and mitochondrial ribosome proteins. The high abundance of Parkin at 5 days padp suggests that activation of mitophagy induced degradation of mitochondria occurred. Further verification of autophagy/mitophagy-related genes by reverse-transcription quantitative RT-PCR (RT-qPCR) in SBPH after RBSDV acquisition showed up-regulation of the autophagy receptors Optineurin (OPTN), Sequestosome-1 (SQSTM1, also known as p62) and Tax1-binding protein 1 (TAX1BP1) which targets ubiquitinated damaged mitochondria during mitophagy. The phosphorylation of the three autophagy receptors may be up-regulated through an increase of transcription level TRAF-associated NFκB activator (TANK)-binding kinase 1 (TBK1). As a result, an overall reduction in the abundance of mitochondrial proteins was observed and the selective autophagic degradation was up-regulated through increased transcription level of OPTN, p62/SQSTM1, TAX1BP1 and TBK1. Therefore, acquisition of RBSDV associated with up-regulated autophagy and selective mitochondrial degradation in SBPH suggest prevention of mitochondrial-mediated apoptosis and extension of the vector life span. BIOLOGICAL SIGNIFICANCE: RBSDV causes severe yield loss in rice plants. RBSDV is transmitted efficiently only through SBPH. It is important to understand how RBSDV infects SBPH in a persistent, circulative and propagative manner. However, there has been no study on the interaction between RBSDV and SBPH at the early acquisition stage using a proteomics approach. In this study, we combined iTRAQ technique and LC-MS/MS to analyze the vector proteomics at both the initial and latent infection stages after RBSDV acquisition and verified the results by RT-qPCR. Our results revealed that significantly low DAPs were involved in various pathways, including biosynthesis of secondary metabolites, ribosomes, carbon metabolism, biosynthesis of amino acids and TCA cycle. Further clustering of the DAPs revealed significant changes in SBPH mitochondria, including decreased proteins in mitochondrial ribosomes and electron transport chain complex I, II and V. On the other hand, there was a high abundance of Parkin, suggesting the occurrence of mitochondria damage and subsequent Parkin-mediated mitophagy for clearance of impaired mitochondria. Moreover, the decreased level of PMPCB in terms of gene expression and protein abundance suggested decreased PINK1 turnover, promoting Parkin/PINK1-mediated mitophagy. Further analysis on autophagy/mitophagy-related gene transcription level indicated up-regulation of OPTN, p62/SQSTM1, TAX1BP1 and TBK1, promoting selective autophagy in SBPH after RBSDV acquisition. These findings provided new insights into the effects of RBSDV on SBPH after early acquisition by selective degradation of mitochondria, especially on reprogramming of energy metabolism and decreased mitochondria biogenesis, to prevent apoptosis and prolong the life span of SBPH post virus acquisition.

摘要

植物病毒会在其昆虫媒介中引发多种反应。通过基于 iTRAQ 的定量蛋白质组学分析,揭示了感染水稻黑条矮缩病毒(RBSDV)后 3 天和 5 天的昆虫媒介小褐飞虱(Laodelphax striatellus Fallén,SBPH)的早期反应。在 SBPH 中鉴定出了 582 种差异丰度蛋白(DAP),其 fold change >1.500 或 <0.667(p-value < 0.05)。在感染病毒后 3 天和 5 天的 SBPH 中,分别有 106 种高丰度蛋白和 193 种低丰度蛋白,5 天 padp 中有 214 种高丰度蛋白和 182 种低丰度蛋白。其中,51 种高丰度蛋白和 42 种低丰度蛋白在 3 天和 5 天 padp 中均表现一致。京都基因与基因组百科全书(KEGG)分析映射和基因本体论(GO)术语分类表明,RBSDV 获得后 SBPH 的线粒体受到损害,通过 STRING 程序分析的 582 种差异丰度 SBPH 蛋白中的 77 种显示出线粒体 DAP 的相互作用网络,表明包括电子传递链蛋白和线粒体核糖体蛋白在内的线粒体蛋白总体下调。Parkin 在 5 天 padp 中的高丰度表明,诱导的线粒体自噬降解发生。进一步通过 RBSDV 获得后在 SBPH 中进行逆转录定量 RT-PCR(RT-qPCR)验证自噬/线粒体自噬相关基因,发现自噬受体 Optineurin(OPTN)、Sequestosome-1(SQSTM1,也称为 p62)和 Tax1-binding protein 1(TAX1BP1)上调,这些蛋白在自噬过程中靶向泛素化受损的线粒体。三种自噬受体的磷酸化可能通过 TRAF 相关 NFκB 激活剂(TANK)结合激酶 1(TBK1)转录水平的增加而上调。因此,观察到线粒体蛋白丰度的整体降低,通过 OPTN、p62/SQSTM1、TAX1BP1 和 TBK1 转录水平的增加,选择性自噬降解被上调。因此,SBPH 中 RBSDV 相关的自噬和选择性线粒体降解的增加表明预防了线粒体介导的细胞凋亡并延长了载体的寿命。生物学意义:RBSDV 导致水稻植株严重减产。RBSDV 仅通过 SBPH 高效传播。了解 RBSDV 如何以持续、循环和繁殖的方式感染 SBPH 非常重要。然而,迄今为止,还没有使用蛋白质组学方法研究 RBSDV 与 SBPH 在早期获取阶段的相互作用。在这项研究中,我们结合 iTRAQ 技术和 LC-MS/MS 分析了 RBSDV 获得后初始和潜伏感染阶段的载体蛋白质组学,并通过 RT-qPCR 验证了结果。我们的结果表明,参与各种途径的差异丰度蛋白显著减少,包括次生代谢物合成、核糖体、碳代谢、氨基酸合成和 TCA 循环。进一步的 DAP 聚类显示 SBPH 线粒体发生了显著变化,包括线粒体核糖体和电子传递链复合物 I、II 和 V 的蛋白减少。另一方面,Parkin 的丰度很高,表明线粒体损伤的发生以及随后 Parkin 介导的线粒体自噬以清除受损的线粒体。此外,PMPCB 的基因表达和蛋白丰度降低表明 PINK1 周转率降低,促进了 Parkin/PINK1 介导的线粒体自噬。进一步分析自噬/线粒体自噬相关基因转录水平表明,RBSDV 获得后 OPTN、p62/SQSTM1、TAX1BP1 和 TBK1 的上调促进了 SBPH 中的选择性自噬。这些发现为 RBSDV 在早期获取后通过选择性降解线粒体对 SBPH 的影响提供了新的见解,特别是在能量代谢和减少线粒体生物发生的重编程方面,以防止细胞凋亡并延长 SBPH 病毒感染后的寿命。

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