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Martini 3: a general purpose force field for coarse-grained molecular dynamics.马蒂尼 3 模型:一种通用的粗粒化分子动力学力场。
Nat Methods. 2021 Apr;18(4):382-388. doi: 10.1038/s41592-021-01098-3. Epub 2021 Mar 29.
2
PIP promotes conformation-specific dimerization of the EphA2 membrane region.PIP 促进 EphA2 膜区构象特异性二聚化。
J Biol Chem. 2021 Jan-Jun;296:100149. doi: 10.1074/jbc.RA120.016423. Epub 2020 Dec 10.
3
Viral Bcl2s' transmembrane domain interact with host Bcl2 proteins to control cellular apoptosis.病毒 Bcl2s 的跨膜结构域与宿主 Bcl2 蛋白相互作用,以控制细胞凋亡。
Nat Commun. 2020 Nov 27;11(1):6056. doi: 10.1038/s41467-020-19881-9.
4
Mcl-1 and Bok transmembrane domains: Unexpected players in the modulation of apoptosis.Mcl-1 和 Bok 跨膜结构域:调节细胞凋亡的意外参与者。
Proc Natl Acad Sci U S A. 2020 Nov 10;117(45):27980-27988. doi: 10.1073/pnas.2008885117. Epub 2020 Oct 22.
5
Membrane receptor activation mechanisms and transmembrane peptide tools to elucidate them.膜受体激活机制和跨膜肽工具来阐明它们。
J Biol Chem. 2020 Feb 14;295(7):1792-1814. doi: 10.1074/jbc.REV119.009457. Epub 2019 Dec 25.
6
The role of hydrophobic matching on transmembrane helix packing in cells.疏水匹配在细胞跨膜螺旋堆积中的作用。
Cell Stress. 2017 Nov 2;1(2):90-106. doi: 10.15698/cst2017.11.111.
7
Mechanistic insights into the pH-dependent membrane peptide ATRAM.对pH依赖性膜肽ATRAM的机制性见解。
J Control Release. 2019 Mar 28;298:142-153. doi: 10.1016/j.jconrel.2019.02.010. Epub 2019 Feb 11.
8
A novel pH-dependent membrane peptide that binds to EphA2 and inhibits cell migration.一种新型的 pH 依赖性膜肽,与 EphA2 结合并抑制细胞迁移。
Elife. 2018 Sep 17;7:e36645. doi: 10.7554/eLife.36645.
9
Balancing Force Field Protein-Lipid Interactions To Capture Transmembrane Helix-Helix Association.平衡力场蛋白质-脂质相互作用以捕捉跨膜螺旋-螺旋缔合
J Chem Theory Comput. 2018 Mar 13;14(3):1706-1715. doi: 10.1021/acs.jctc.7b00983. Epub 2018 Feb 9.
10
Combination of Cα-H Hydrogen Bonds and van der Waals Packing Modulates the Stability of GxxxG-Mediated Dimers in Membranes.Cα-H 氢键和范德华堆积共同调节 GxxxG 介导的二聚体在膜中的稳定性。
J Am Chem Soc. 2017 Nov 8;139(44):15774-15783. doi: 10.1021/jacs.7b07505. Epub 2017 Oct 27.

膜配体通过构象钳制激活 EphA2 受体。

Conformational Clamping by a Membrane Ligand Activates the EphA2 Receptor.

机构信息

Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, 1311 Cumberland Avenue, Knoxville, TN 37996, USA.

Department of Physiology and Biophysics, Case Western Reserve University, School of Medicine, 10900 Euclid Avenue, Cleveland, OH 44106, USA.

出版信息

J Mol Biol. 2021 Sep 3;433(18):167144. doi: 10.1016/j.jmb.2021.167144. Epub 2021 Jul 3.

DOI:10.1016/j.jmb.2021.167144
PMID:34229012
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8380685/
Abstract

The EphA2 receptor is a promising drug target for cancer treatment, since EphA2 activation can inhibit metastasis and tumor progression. It has been recently described that the TYPE7 peptide activates EphA2 using a novel mechanism that involves binding to the single transmembrane domain of the receptor. TYPE7 is a conditional transmembrane (TM) ligand, which only inserts into membranes at neutral pH in the presence of the TM region of EphA2. However, how membrane interactions can activate EphA2 is not known. We systematically altered the sequence of TYPE7 to identify the binding motif used to activate EphA2. With the resulting six peptides, we performed biophysical and cell migration assays that identified a new potent peptide variant. We also performed a mutational screen that determined the helical interface that mediates dimerization of the TM domain of EphA2 in cells. These results, together with molecular dynamic simulations, allowed to elucidate the molecular mechanism that TYPE7 uses to activate EphA2, where the membrane peptide acts as a molecular clamp that wraps around the TM dimer of the receptor. We propose that this binding mode stabilizes the active conformation of EphA2. Our data, additionally, provide clues into the properties that TM ligands need to have in order to achieve activation of membrane receptors.

摘要

EphA2 受体是癌症治疗的一个很有前途的药物靶点,因为 EphA2 的激活可以抑制转移和肿瘤进展。最近有人描述说,TYPE7 肽通过一种新的机制激活 EphA2,该机制涉及与受体的单个跨膜域结合。TYPE7 是一种条件性跨膜(TM)配体,只有在 EphA2 的 TM 区域存在的情况下,它才会在中性 pH 值下插入到膜中。然而,膜相互作用如何激活 EphA2 尚不清楚。我们系统地改变了 TYPE7 的序列,以确定用于激活 EphA2 的结合基序。利用得到的六个肽,我们进行了生物物理和细胞迁移测定,确定了一种新的有效肽变体。我们还进行了突变筛选,确定了介导 EphA2 的 TM 域在细胞中二聚化的螺旋界面。这些结果,以及分子动力学模拟,阐明了 TYPE7 激活 EphA2 的分子机制,其中膜肽作为一种分子夹,围绕受体的 TM 二聚体缠绕。我们提出,这种结合模式稳定了 EphA2 的活性构象。此外,我们的数据还提供了线索,说明 TM 配体需要具有哪些特性才能实现膜受体的激活。