Department of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Institute of Nephrology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Bioengineered. 2021 Dec;12(1):2576-2591. doi: 10.1080/21655979.2021.1936816.
This study aimed to screen key biomarkers and investigate immune infiltration in pulmonary arterial hypertension (PAH) based on integrated bioinformatics analysis. The Gene Expression Omnibus (GEO) database was used to download three mRNA expression profiles comprising 91 PAH lung specimens and 49 normal lung specimens. Three mRNA expression datasets were combined, and differentially expressed genes (DEGs) were obtained. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses and the protein-protein interaction (PPI) network of DEGs were performed using the STRING and DAVID databases, respectively. The diagnostic value of hub gene expression in PAH was also analyzed. Finally, the infiltration of immune cells in PAH was analyzed using the CIBERSORT algorithm. Total 182 DEGs (117 upregulated and 65 downregulated) were identified, and 15 hub genes were screened. These 15 hub genes were significantly associated with immune system functions such as myeloid leukocyte migration, neutrophil migration, cell chemotaxis, Toll-like receptor signaling pathway, and NF-κB signaling pathway. A 7-gene-based model was constructed and had a better diagnostic value in identifying PAH tissues compared with normal controls. The immune infiltration profiles of the PAH and normal control samples were significantly different. High proportions of resting NK cells, activated mast cells, monocytes, and neutrophils were found in PAH samples, while high proportions of resting T cells CD4 memory and Macrophages M1 cell were found in normal control samples. Functional enrichment of DEGs and immune infiltration analysis between PAH and normal control samples might help to understand the pathogenesis of PAH.
本研究旨在通过整合生物信息学分析筛选肺动脉高压(PAH)的关键生物标志物并探究免疫浸润情况。我们使用基因表达综合数据库(GEO)下载了包含 91 例 PAH 肺组织样本和 49 例正常肺组织样本的三个 mRNA 表达谱。对三个 mRNA 数据集进行合并,获得差异表达基因(DEGs)。使用 STRING 和 DAVID 数据库分别对 DEGs 进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)分析以及蛋白互作(PPI)网络构建。还分析了 hub 基因在 PAH 中的诊断价值。最后,使用 CIBERSORT 算法分析 PAH 中的免疫细胞浸润情况。共鉴定出 182 个 DEGs(117 个上调和 65 个下调),筛选出 15 个 hub 基因。这些 hub 基因与髓样白细胞迁移、中性粒细胞迁移、细胞趋化性、Toll 样受体信号通路和 NF-κB 信号通路等免疫系统功能显著相关。构建了一个基于 7 个基因的模型,与正常对照相比,该模型在识别 PAH 组织方面具有更好的诊断价值。PAH 和正常对照样本的免疫浸润图谱存在显著差异。在 PAH 样本中发现静息 NK 细胞、活化肥大细胞、单核细胞和中性粒细胞比例较高,而在正常对照样本中发现静息 CD4 记忆 T 细胞和巨噬细胞 M1 细胞比例较高。DEGs 的功能富集和 PAH 与正常对照样本的免疫浸润分析可能有助于理解 PAH 的发病机制。