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海水体系中疏水蛋白与油形成的纳米结构的分子动力学模拟

Molecular Dynamics Simulations of Nanostructures Formed by Hydrophobins and Oil in Seawater.

机构信息

Department of Chemical Engineering, Northeastern University, Boston, Massachusetts 02115, United States.

Center for Computation and Technology, Louisiana State University, Baton Rouge, Louisiana 70803, United States.

出版信息

J Phys Chem B. 2021 Jul 22;125(28):7886-7899. doi: 10.1021/acs.jpcb.1c02040. Epub 2021 Jul 8.

Abstract

Classical molecular dynamics simulations using the Martini coarse-grained force field were performed to study oil nanodroplets surrounded by fungal hydrophobin (HP) proteins in seawater. The class I EAS and the class II HFBII HPs were studied along with two model oils, namely, benzene and -decane. Both HPs exhibit free energy minima at the oil-seawater interface, which is deeper in benzene compared to the -decane systems. Larger constraint forces are required to keep both HPs within the -decane phase compared to inside benzene, with HFBII being more affine to benzene compared to EAS. Smaller surface tensions are observed at benzene-seawater interfaces coated with HPs compared to their -decane counterparts. In the latter the surface tension remains unchanged upon increases in the concentration of HPs, whereas in benzene systems adding more HPs lead to decreases in surface tension. EAS has a larger tendency to cluster together in the interface compared to HFBII, with both HPs having larger coordination numbers when surrounding benzene droplets compared to when they are around -decane nanoblobs. The HP-oil nanostructures in seawater examined have radii of gyration ranging between 2 and 12 nm, where the -decane structures are larger and have more irregular shapes compared to the benzene systems. The -decane molecules within the nanostructures form a compact spherical core, with the HPs partially covering its surface and clustering together, conferring irregular shapes to the nanostructures. The EAS with -decane structures are larger and have more irregular shapes compared to their HFBII counterparts. In contrast, in the HP-benzene structures both HPs tend to penetrate the oil part of the droplet. The HFBII-benzene structures having the larger oil/HP ratios examined tend to be more compact and spherical compared to their EAS counterparts; however, some of the HFBII-benzene systems that have smaller oil/HP ratios have a more elongated structure compared to their EAS counterparts. This simulation study provides insights into HP-oil nanostructures that are smaller than the oil droplets and gas bubbles recently studied in experiments and, thus, might be challenging to examine with experimental techniques.

摘要

使用 Martini 粗粒化力场进行了经典分子动力学模拟,以研究海水中油纳米液滴周围的真菌疏水性蛋白(HP)。研究了 I 类 EAS 和 II 类 HFBII HP,以及两种模型油,即苯和癸烷。两种 HP 在油水界面处均表现出自由能极小值,与癸烷相比,苯体系中的极小值更深。与苯相比,保持两种 HP 在癸烷相中需要更大的约束力,与 EAS 相比,HFBII 更适合苯。与癸烷相比,涂有 HP 的苯-海水界面的表面张力更小。在后一种情况下,随着 HP 浓度的增加,表面张力保持不变,而在苯体系中,添加更多的 HP 会导致表面张力降低。与 HFBII 相比,EAS 在界面中更倾向于聚集在一起,与癸烷相比,当 HP 围绕苯液滴时,其配位数更大,而当它们围绕癸烷纳米球时则更大。在海水中,HP-油纳米结构的旋转半径在 2nm 到 12nm 之间,其中癸烷结构更大,形状更不规则,与苯体系相比。纳米结构内的癸烷分子形成一个紧凑的球形核心,HP 部分覆盖其表面并聚集在一起,使纳米结构具有不规则形状。与 HFBII 相比,EAS 与癸烷结构更大,形状更不规则。相比之下,在 HP-苯结构中,两种 HP 都倾向于渗透液滴的油部分。在所研究的具有较大油/HP 比的 HFBII-苯结构中,与 EAS 相比,它们往往更紧凑和球形;然而,一些具有较小油/HP 比的 HFBII-苯体系与 EAS 相比具有更拉长的结构。这项模拟研究提供了对 HP-油纳米结构的深入了解,这些结构比最近在实验中研究的油滴和气泡小,因此可能难以用实验技术进行研究。

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