Department of Chemical Sciences and Centre for Advanced Functional Materials, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur-741246, India.
Chem Commun (Camb). 2021 Aug 3;57(62):7597-7609. doi: 10.1039/d1cc02880d.
How modern enzymes evolved as complex catalytic machineries to facilitate diverse chemical transformations is an open question for the emerging field of systems chemistry. Inspired by Nature's ingenuity in creating complex catalytic structures for exotic functions, short peptide-based cross β amyloid sequences have been shown to access intricate binding surfaces demonstrating the traits of extant enzymes and proteins. Based on their catalytic proficiencies reported recently, these amyloid assemblies have been argued as the earliest protein folds. Herein, we map out the recent progress made by our laboratory and other research groups that demonstrate the catalytic diversity of cross β amyloid assemblies. The important role of morphology and specific mutations in peptide sequences has been underpinned in this review. We have divided the feature article into different sections where examples from biology have been covered demonstrating the mechanism of extant biocatalysts and compared with recent works on cross β amyloid folds showing covalent catalysis, aldolase, hydrolase, peroxidase-like activities and complex cascade catalysis. Beyond equilibrium, we have extended our discussion towards transient catalytic amyloid phases mimicking the energy driven cytoskeleton polymerization. Finally, a future outlook has been provided on the way ahead for short peptide-based systems chemistry approaches that can lead to the development of robust catalytic networks with improved enzyme-like proficiencies and higher complexities. The discussed examples along with the rationale behind selecting specific amino acids sequence will benefit readers to design systems for achieving catalytic reactivity similar to natural complex enzymes.
现代酶如何进化为复杂的催化机器,以促进多样化的化学转化,这是系统化学这一新兴领域的一个悬而未决的问题。受自然界在创造具有奇异功能的复杂催化结构方面的创造力的启发,基于短肽的交叉β淀粉样序列已被证明可以进入复杂的结合表面,展示了现有酶和蛋白质的特性。基于最近报道的催化效率,这些淀粉样组装体被认为是最早的蛋白质折叠。在此,我们总结了我们实验室和其他研究小组最近取得的进展,这些进展证明了交叉β淀粉样组装体的催化多样性。本文综述了形态和肽序列特定突变的重要作用。我们将这篇专题文章分为不同的部分,其中涵盖了生物学实例,展示了现有生物催化剂的机制,并与最近关于交叉β淀粉样折叠的工作进行了比较,这些工作展示了共价催化、醛缩酶、水解酶、过氧化物酶样活性和复杂级联催化。超越平衡,我们将讨论扩展到模拟能量驱动的细胞骨架聚合的瞬态催化淀粉样相。最后,对基于短肽的系统化学方法的未来展望进行了讨论,这些方法可以导致具有改进的类似酶的效率和更高复杂性的稳健催化网络的发展。所讨论的例子以及选择特定氨基酸序列的原理将使读者受益,从而设计出类似于天然复杂酶的催化反应性的系统。