Brubaker Linda, Gourdine Jean-Philippe F, Siddiqui Nazema Y, Holland Amanda, Halverson Thomas, Limeria Roberto, Pride David, Ackerman Lenore, Forster Catherine S, Jacobs Kristin M, Thomas-White Krystal J, Putonti Catherine, Dong Qunfeng, Weinstein Michael, Lukacz Emily S, Karstens Lisa, Wolfe Alan J
Department of Obstetrics, Gynecology and Reproductive Sciences, Division of Female Pelvic Medicine and Reconstructive Surgery, University of California, San Diego, San Diego, California, USA.
Oregon Clinical & Translational Research Institute (OCTRI), Oregon Health & Science University, Portland, Oregon, USA.
mSystems. 2021 Aug 31;6(4):e0137120. doi: 10.1128/mSystems.01371-20. Epub 2021 Jul 20.
Urobiome research has the potential to advance the understanding of a wide range of diseases, including lower urinary tract symptoms and kidney disease. Many scientific areas have benefited from early research method consensus to facilitate the greater, common good. This consensus document, developed by a group of expert investigators currently engaged in urobiome research (UROBIOME 2020 conference participants), aims to promote standardization and advances in this field by the adoption of common core research practices. We propose a standardized nomenclature as well as considerations for specimen collection, preservation, storage, and processing. Best practices for urobiome study design include our proposal for standard metadata elements as part of core metadata collection. Although it is impractical to follow fixed analytical procedures when analyzing urobiome data, we propose guidelines to document and report data originating from urobiome studies. We offer this first consensus document with every expectation of subsequent revision as our field progresses.
泌尿微生物组研究有潜力推动对包括下尿路症状和肾脏疾病在内的多种疾病的理解。许多科学领域都受益于早期的研究方法共识,以促进更大的共同利益。这份共识文件由一群目前从事泌尿微生物组研究的专家调查人员(2020年泌尿微生物组会议参与者)制定,旨在通过采用共同的核心研究实践来促进该领域的标准化和进步。我们提出了标准化的命名法以及标本采集、保存、储存和处理的注意事项。泌尿微生物组研究设计的最佳实践包括我们提出的将标准元数据元素作为核心元数据收集的一部分。虽然在分析泌尿微生物组数据时遵循固定的分析程序不切实际,但我们提出了记录和报告源自泌尿微生物组研究的数据的指南。我们提供这份第一份共识文件,并期望随着我们领域的发展进行后续修订。